User: lauretomas

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lauretomas10
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Posts by lauretomas

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Comment: C: Convert .gprobs files to PLINK format
... Thanks. I have seen that post, and tried some tools from there, but I lost some information in the process so I posted my own question to see if anyone know a direct conversion for my data, that is not the same that the one in that post. ...
written 9 weeks ago by lauretomas10
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Comment: C: Convert .gprobs files to PLINK format
... I've tried the following code: plink --gen file_chr10.gprobs.gz --sample file.sample --oxford-single-chr 10 --make-bed --out output It started converting variants, but then it gave an error: Error: File read failure. And I don´t know why it gives this error. I think it could be because ...
written 9 weeks ago by lauretomas10
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Convert .gprobs files to PLINK format
... Hello all, I have some imputed .gprobs files (one per chromosome), imputed by Impute2 downloaded from dbGaP, and I need to convert this file into .bed format of PLINK in order to do some analysis. My .gprobs files look like: --- rs371609562:61395:CTT:C 61395 CTT C 0 0.023 0.977 0 0.039 0.961 ...
genome gprobs plink snp dbgap written 9 weeks ago by lauretomas10 • updated 9 weeks ago by chrchang5233.9k

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