User: cetin.m

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Comment: C: Understanding a VCF - Genotype likelihoods and genotype call
... I know. I am just trying to understand how the genotype likelihood part works. Do you have a comment about that? Thanks. ...
written 10 weeks ago by cetin.m0
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Understanding a VCF - Genotype likelihoods and genotype call
... I calculated genotype likelihoods from a BAM file with the command: "samtools mpileup -g -f filename" and got the BCF file. Then I used "bcftools call -c -v filename" to get the VCF. In the VCF file, I see the following two: 1 589051 . G A 7.79993 . DP=1;SGB=-0.37988 ...
sequence next-gen sequencing written 10 weeks ago by cetin.m0

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