User: arshil
arshil • 0
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Posts by arshil
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... Hi,
can anyone help me how to trim adapter for multiple fastq files using trim galore. I have like 100 files paired end which are something like "W-CA-019-2-19_S6_LAll_R1_001.fastq.gz X-CA-022-2-20_S2_LAll_R1_001.fastq.gz
W-CA-019-2-19_S6_LAll_R2_001.fastq.gz X-CA-022-2-20_S2_LAll_R2_001.fastq. ...
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Comment:
C: problem with bowtie2 allignment
... It was already installed on cluster!
All I did was module load bowtie2
And wrote my command ...
written 4 months ago by
arshil • 0
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Comment:
C: problem with bowtie2 allignment
... Total of 50 gb memory and I tried using p as 6, still
Getting the same error!! ...
written 4 months ago by
arshil • 0
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Comment:
A: problem with bowtie2 allignment
... Hi! So I am running this command on HPC cluster which has 32 cores!! ...
written 4 months ago by
arshil • 0
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... Can any help me out with this problem. I am using bowtie2 to allign my fastq files to reference genome hg38. every time when I run the following Command i am getting and error (ERR): bowtie2-align died with signal 9 (KILL)".
command I am using :
bowtie2 -p 24 -x hg38 -X 2000 -1 R-CA-013-2-14 ...
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