User: arshil

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arshil0
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Posts by arshil

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(Closed) cut adapter using trim galore
... Hi, can anyone help me how to trim adapter for multiple fastq files using trim galore. I have like 100 files paired end which are something like "W-CA-019-2-19_S6_LAll_R1_001.fastq.gz X-CA-022-2-20_S2_LAll_R1_001.fastq.gz W-CA-019-2-19_S6_LAll_R2_001.fastq.gz X-CA-022-2-20_S2_LAll_R2_001.fastq. ...
rna-seq written 26 days ago by arshil0 • updated 25 days ago by h.mon19k
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Comment: C: problem with bowtie2 allignment
... It was already installed on cluster! All I did was module load bowtie2 And wrote my command ...
written 10 weeks ago by arshil0
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Comment: C: problem with bowtie2 allignment
... Total of 50 gb memory and I tried using p as 6, still Getting the same error!! ...
written 10 weeks ago by arshil0
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Comment: A: problem with bowtie2 allignment
... Hi! So I am running this command on HPC cluster which has 32 cores!! ...
written 10 weeks ago by arshil0
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problem with bowtie2 allignment
... Can any help me out with this problem. I am using bowtie2 to allign my fastq files to reference genome hg38. every time when I run the following Command i am getting and error (ERR): bowtie2-align died with signal 9 (KILL)". command I am using : bowtie2 -p 24 -x hg38 -X 2000 -1 R-CA-013-2-14 ...
bowtie2 rna-seq written 10 weeks ago by arshil0 • updated 9 weeks ago by Biostar ♦♦ 20

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