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Posts by soya
Peak call? or Just convert to bedfile by bedtools bamtobed? to generate the accessibility matrix of single-end single cell ATAC-seq
... I'm wondering about the "single-end" single cell ATAC-seq (scATAC-seq) analysis. The reads obtained from each cell is at most 1 read at each region, by nature. Some paired-end scATAC-seq pipelines execute the peak-calling by MACS2 etc., but it seems to be hard to detect peaks from single-end single ...
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