User: arr234

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arr23420
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Posts by arr234

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How to collect SNP dataset from databases for SNP analysis?
... https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449402/ - In this study, it is mentioned that human APOE gene has 183 validated SNPs out of which 31 are missense, 21 are synonymous, 2 are nonsense, 98 are intronic, 7 are 5′ UTR, 6 are 3′ UTR, 7 are downstream, 8 are upstream, 1 is splice donor and 2 a ...
snp databases written 8 months ago by arr23420 • updated 8 months ago by Pierre Lindenbaum122k
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Comment: C: How to choose good tools for identifying functional SNPs?
... Thank you, Kevin Blighe. So now I can choose randomly any tool from each category in this list or should the choice be based on any criteria for best tools? ...
written 9 months ago by arr23420
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How to choose good tools for identifying functional SNPs?
... If you look at the materials and methods of ([https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449402/][1]) this paper, they have suggested using any three tools from each method (sequence homology-based methods, supervised learning methods, protein sequence and structure-based methods and consensus-ba ...
snp written 9 months ago by arr23420 • updated 9 months ago by Kevin Blighe48k
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How to use dbSNP database?
... I want to collect missense SNPs, nonsense SNPs, SNPs in the 5' UTR and SNPs in the 3'UTR region for a particular gene in humans. How do I do that? ...
snp written 9 months ago by arr23420 • updated 9 months ago by Pierre Lindenbaum122k

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