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0
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1
reply
401
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Comment:
Comment: Less number of total Species than Genus in 16S data
3 months ago by
arshad1292
▴ 100
2
votes
3
replies
401
views
Less number of total Species than Genus in 16S data
microbiome
Species
Genus
ASV
16S
updated 3 months ago by
Philipp Bayer
8.3k • written 3 months ago by
arshad1292
▴ 100
0
votes
0
replies
360
views
NMDS plotting issue
NMDS
metagenomic
10 months ago by
arshad1292
▴ 100
6
votes
3
replies
610
views
grep value from html file
cat
script
commandline
shell
grep
updated 10 months ago by
dariober
14k • written 10 months ago by
arshad1292
▴ 100
4
votes
3
replies
888
views
comparing two metagenomics data sets
metagenomics
updated 13 months ago by
Mensur Dlakic
★ 26k • written 13 months ago by
arshad1292
▴ 100
0
votes
0
replies
371
views
How to interpret different reduced models in time series analysis with DESeq2?
time-series
DESeq2
16 months ago by
arshad1292
▴ 100
0
votes
0
replies
1.2k
views
Comment:
Comment: Interpreting time-series analysis with DESeq2 output
16 months ago by
arshad1292
▴ 100
0
votes
1
reply
1.2k
views
Comment:
Comment: Interpreting time-series analysis with DESeq2 output
16 months ago by
arshad1292
▴ 100
0
votes
0
replies
1.2k
views
Comment:
Comment: Interpreting time-series analysis with DESeq2 output
16 months ago by
arshad1292
▴ 100
0
votes
2
replies
691
views
labelling selected genes in volcano plot
RNAseq
R
plot
volcano
updated 16 months ago by
ATpoint
81k • written 16 months ago by
arshad1292
▴ 100
0
votes
2
replies
1.2k
views
Comment:
Comment: Interpreting time-series analysis with DESeq2 output
16 months ago by
arshad1292
▴ 100
1
vote
8
replies
1.2k
views
Interpreting time-series analysis with DESeq2 output
time-series
DESeq2
16 months ago by
arshad1292
▴ 100
0
votes
0
replies
733
views
Comment:
Comment: How to convert trinotate results into GFF3
16 months ago by
arshad1292
▴ 100
1
vote
2
replies
733
views
How to convert trinotate results into GFF3
gff3
gtf
trinotate
16 months ago by
arshad1292
▴ 100
1
vote
1
reply
535
views
time-series analysis with DESeq2
time-series
multifactorial
R
DESeq2
updated 17 months ago by
Derrik
▴ 40 • written 17 months ago by
arshad1292
▴ 100
0
votes
2
replies
813
views
creating a list of genes in python
rnaseq
python
updated 17 months ago by
M.O.L.S
▴ 100 • written 17 months ago by
arshad1292
▴ 100
0
votes
0
replies
332
views
how to set zorder for volcano plot
matplotlib
python
zorder
volcano
17 months ago by
arshad1292
▴ 100
0
votes
0
replies
504
views
Comment:
Comment: rename so that dot (.) is replaced with underscore (_)
17 months ago by
arshad1292
▴ 100
1
vote
2
replies
504
views
rename so that dot (.) is replaced with underscore (_)
rename
linux
mv
17 months ago by
arshad1292
▴ 100
0
votes
0
replies
492
views
Comment:
Comment: creating a txt file with absolute path to each directory
18 months ago by
arshad1292
▴ 100
1
vote
2
replies
492
views
creating a txt file with absolute path to each directory
shell
linux
script
18 months ago by
arshad1292
▴ 100
0
votes
0
replies
574
views
Comment:
Comment: renaming files and including folder/directory name in it
18 months ago by
arshad1292
▴ 100
0
votes
2
replies
574
views
renaming files and including folder/directory name in it
rename
loop
mv
18 months ago by
arshad1292
▴ 100
0
votes
0
replies
1.6k
views
Comment:
Comment: problem with GTF file
18 months ago by
arshad1292
▴ 100
0
votes
2
replies
1.6k
views
problem with GTF file
gtf
repeatmasker
gff
AGAT
gffread
18 months ago by
arshad1292
▴ 100
0
votes
1
reply
1.2k
views
Comment:
Comment: Confused about bin completion and contamination
21 months ago by
arshad1292
▴ 100
3
votes
3
replies
1.2k
views
Confused about bin completion and contamination
metagenomics
bins
metagenome
updated 21 months ago by
Mensur Dlakic
★ 26k • written 21 months ago by
arshad1292
▴ 100
0
votes
0
replies
722
views
Comment:
Comment: Why we allow contamination during binning?
23 months ago by
arshad1292
▴ 100
3
votes
2
replies
722
views
Why we allow contamination during binning?
completion
MAGs
contamination
metagenomic
metagenome
23 months ago by
arshad1292
▴ 100
2
votes
7
replies
1.3k
views
6 follow
Finding closest genome from genbank
bacterial
genome
blast
genbank
updated 2.1 years ago by
Juke34
8.5k • written 2.1 years ago by
arshad1292
▴ 100
0
votes
0
replies
1.3k
views
Answer:
Answer: Finding closest genome from genbank
2.1 years ago by
arshad1292
▴ 100
0
votes
1
reply
1.3k
views
Comment:
Comment: Finding closest genome from genbank
2.1 years ago by
arshad1292
▴ 100
0
votes
0
replies
1.2k
views
Comment:
Comment: Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
2.1 years ago by
arshad1292
▴ 100
0
votes
1
reply
1.2k
views
Comment:
Comment: Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
2.2 years ago by
arshad1292
▴ 100
1
vote
5
replies
1.2k
views
Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
shotgun
CD-HIT
metagenome
genome
2.1 years ago by
arshad1292
▴ 100
0
votes
1
reply
740
views
Redundancy analysis (RDA) for metagenomic community
bacterial
RDA
analysis
community
Redundancy
metagenome
updated 2.3 years ago by
patrickdm
▴ 230 • written 2.3 years ago by
arshad1292
▴ 100
0
votes
6
replies
1.6k
views
ERROR [mem_sam_pe] paired reads have different names -- during binning in metaWRAP pipeline
metawrap
updated 2.3 years ago by
GenoMax
140k • written 2.7 years ago by
arshad1292
▴ 100
0
votes
0
replies
508
views
neutral community model (NCM) analysis
neutral
NCM
model
community
2.3 years ago by
arshad1292
▴ 100
0
votes
2
replies
927
views
Comment:
Comment: Error in reading tab delimited file
2.4 years ago by
arshad1292
▴ 100
1
vote
4
replies
927
views
Error in reading tab delimited file
R
tab-delimited
updated 2.4 years ago by
cpad0112
21k • written 2.4 years ago by
arshad1292
▴ 100
0
votes
0
replies
704
views
Error in (1 - h) * qs[i] : non-numeric argument to binary operator
R
moanin
time-series
2.4 years ago by
arshad1292
▴ 100
2
votes
0
replies
612
views
Answer:
Answer: Error while running time series analysis in R
2.4 years ago by
arshad1292
▴ 100
2
votes
1
reply
612
views
Error while running time series analysis in R
R
moanin
time-series
2.4 years ago by
arshad1292
▴ 100
0
votes
0
replies
1.3k
views
Comment:
Comment: help with time series analysis
2.4 years ago by
arshad1292
▴ 100
0
votes
1
reply
1.3k
views
Comment:
Comment: help with time series analysis
2.4 years ago by
arshad1292
▴ 100
0
votes
4
replies
1.3k
views
help with time series analysis
time-series
readcount
time
series
RNAseq
2.4 years ago by
arshad1292
▴ 100
0
votes
0
replies
556
views
RRBS methylation analysis
RRBS
analyzer
bismark
HMST-Seq
2.5 years ago by
arshad1292
▴ 100
1
vote
2
replies
957
views
how to generate .bed files for methylation (RRBS) analysis
methylation
updated 2.5 years ago by
colindaven
6.3k • written 2.5 years ago by
arshad1292
▴ 100
0
votes
0
replies
551
views
Mapping reads and quantifying genes - Metagenomic workshop
metagenome
2.6 years ago by
arshad1292
▴ 100
0
votes
0
replies
633
views
Comment:
Comment: Metawrap pipeline doesn't detect samples
2.6 years ago by
arshad1292
▴ 100
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