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2
votes
3
replies
431
views
Less number of total Species than Genus in 16S data
microbiome Species Genus ASV 16S
updated 4 months ago by 8.3k • written 4 months ago by ▴ 100
0
votes
0
replies
374
views
NMDS plotting issue
NMDS metagenomic
10 months ago by arshad1292 ▴ 100
6
votes
3
replies
635
views
grep value from html file
cat script commandline shell grep
updated 10 months ago by 14k • written 10 months ago by ▴ 100
4
votes
3
replies
920
views
comparing two metagenomics data sets
metagenomics
updated 14 months ago by ★ 27k • written 14 months ago by ▴ 100
0
votes
0
replies
380
views
How to interpret different reduced models in time series analysis with DESeq2?
time-series DESeq2
17 months ago by arshad1292 ▴ 100
0
votes
2
replies
714
views
labelling selected genes in volcano plot
RNAseq R plot volcano
updated 17 months ago by 81k • written 17 months ago by ▴ 100
1
vote
8
replies
1.3k
views
Interpreting time-series analysis with DESeq2 output
time-series DESeq2
17 months ago by arshad1292 ▴ 100
1
vote
2
replies
747
views
How to convert trinotate results into GFF3
gff3 gtf trinotate
17 months ago by arshad1292 ▴ 100
1
vote
1
reply
543
views
time-series analysis with DESeq2
time-series multifactorial R DESeq2
updated 17 months ago by ▴ 40 • written 17 months ago by ▴ 100
0
votes
2
replies
832
views
creating a list of genes in python
rnaseq python
updated 17 months ago by ▴ 100 • written 17 months ago by ▴ 100
0
votes
0
replies
341
views
how to set zorder for volcano plot
matplotlib python zorder volcano
18 months ago by arshad1292 ▴ 100
1
vote
2
replies
517
views
rename so that dot (.) is replaced with underscore (_)
rename linux mv
18 months ago by arshad1292 ▴ 100
1
vote
2
replies
510
views
creating a txt file with absolute path to each directory
shell linux script
18 months ago by arshad1292 ▴ 100
0
votes
2
replies
590
views
renaming files and including folder/directory name in it
rename loop mv
19 months ago by arshad1292 ▴ 100
0
votes
2
replies
1.7k
views
problem with GTF file
gtf repeatmasker gff AGAT gffread
19 months ago by arshad1292 ▴ 100
3
votes
3
replies
1.3k
views
Confused about bin completion and contamination
metagenomics bins metagenome
updated 22 months ago by ★ 27k • written 22 months ago by ▴ 100
3
votes
2
replies
748
views
Why we allow contamination during binning?
completion MAGs contamination metagenomic metagenome
2.0 years ago by arshad1292 ▴ 100
2
votes
7
replies
1.4k
views
6 follow
Finding closest genome from genbank
bacterial genome blast genbank
updated 2.1 years ago by 8.5k • written 2.1 years ago by ▴ 100
1
vote
5
replies
1.2k
views
Can I use CD-HIT package for shotgun sequencing data (metagenomic) comparsion?
shotgun CD-HIT metagenome genome
2.2 years ago by arshad1292 ▴ 100
0
votes
1
reply
751
views
Redundancy analysis (RDA) for metagenomic community
bacterial RDA analysis community Redundancy metagenome
updated 2.4 years ago by ▴ 230 • written 2.4 years ago by ▴ 100
0
votes
6
replies
1.7k
views
ERROR [mem_sam_pe] paired reads have different names -- during binning in metaWRAP pipeline
metawrap
updated 2.4 years ago by 141k • written 2.7 years ago by ▴ 100
0
votes
0
replies
516
views
neutral community model (NCM) analysis
neutral NCM model community
2.4 years ago by arshad1292 ▴ 100
1
vote
4
replies
939
views
Error in reading tab delimited file
R tab-delimited
updated 2.5 years ago by 21k • written 2.5 years ago by ▴ 100
0
votes
0
replies
710
views
Error in (1 - h) * qs[i] : non-numeric argument to binary operator
R moanin time-series
2.5 years ago by arshad1292 ▴ 100
2
votes
1
reply
622
views
Error while running time series analysis in R
R moanin time-series
2.5 years ago by arshad1292 ▴ 100
0
votes
4
replies
1.4k
views
help with time series analysis
time-series readcount time series RNAseq
2.5 years ago by arshad1292 ▴ 100
0
votes
0
replies
563
views
RRBS methylation analysis
RRBS analyzer bismark HMST-Seq
2.5 years ago by arshad1292 ▴ 100
1
vote
2
replies
983
views
how to generate .bed files for methylation (RRBS) analysis
methylation
updated 2.6 years ago by 6.3k • written 2.6 years ago by ▴ 100
0
votes
0
replies
563
views
Mapping reads and quantifying genes - Metagenomic workshop
metagenome
2.7 years ago by arshad1292 ▴ 100
0
votes
1
reply
648
views
Metawrap pipeline doesn't detect samples
metawrap
2.7 years ago by arshad1292 ▴ 100
1
vote
4
replies
1.1k
views
extracting Genus abundance info from Kraken 2 output file
kraken2
updated 2.7 years ago by ★ 1.6k • written 2.7 years ago by ▴ 100
1
vote
2
replies
765
views
How to pick top 50 the most abundant pathways?
pathways abundant
2.7 years ago by arshad1292 ▴ 100
3
votes
7
replies
4.3k
views
understanding log2fold change of 0.31 and -0.25
rnaseq log2FC
2.8 years ago by arshad1292 ▴ 100
0
votes
3
replies
1.7k
views
antismash 5.0 (New region concept) - counting BGCs
antismash metagenomics
updated 3.1 years ago by ▴ 140 • written 3.5 years ago by ▴ 100
0
votes
0
replies
845
views
vcf-compare and making Venn diagram
SNP
3.4 years ago by arshad1292 ▴ 100
0
votes
0
replies
1.0k
views
Counting Biosyntheic Gene Clusters (BGC) types from Antismash Output
antismash metagenomics
3.5 years ago by arshad1292 ▴ 100
11
votes
3
replies
4.5k
views
GWAS analysis tool
snp R genome
updated 5.4 years ago by ▴ 30 • written 5.8 years ago by ▴ 100
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