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0
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replies
6.9k
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Low Fraction Reads in Cells (Cellranger Count Pipeline)
snRNA-seq 10X cellranger
updated 2.9 years ago by ▴ 90 • written 2.9 years ago by ▴ 10
0
votes
0
replies
1.5k
views
ReadPosRankSum annotation error (gatk4)
gatk variants filtering VQSR ReadPosRankSum
4.0 years ago by Cricket ▴ 10
0
votes
8
replies
1.2k
views
read group, fastq files, and multiple run ids
picard gatk fastq readgroups next-gen
updated 4.0 years ago by 20 • written 4.2 years ago by ▴ 10
0
votes
0
replies
985
views
Recalibrated bam file is too small (~48K), fails on haplotypecaller
gatk ApplyBQSR short variant detection
4.5 years ago by Cricket ▴ 10
1
vote
6
replies
4.0k
views
Using BWA to create input BAM files for downstream analysis
BWA alignment assembly genomes
7.6 years ago by Cricket ▴ 10
0
votes
2
replies
2.9k
views
Error running /usr/local/bin/tophat_reports
RNA-Seq
7.8 years ago by Cricket ▴ 10
1
vote
2
replies
2.1k
views
RNA-seq: Comparing 2 strains (same experimental conditions)
RNA-Seq
7.9 years ago by Cricket ▴ 10
2
votes
2
replies
2.2k
views
Search using Entrez and return accession numbers (not GI)
Biopython Entrez accession number GI number NCBI
updated 8.0 years ago by ▴ 20 • written 8.0 years ago by ▴ 10
0
votes
0
replies
1.8k
views
Mauve Headers / Add DNA sequence to genbank file
genbank alignment fasta
updated 21 months ago by 43k • written 8.3 years ago by ▴ 10
1
vote
7
replies
6.0k
views
Building Bowtie index failure
RNA-Seq tophat2 bowtie2
updated 21 months ago by 43k • written 8.3 years ago by ▴ 10
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