User: pedrostrusso

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pedrostrusso40
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Posts by pedrostrusso

<prev • 3 results • page 1 of 1 • next >
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Answer: A: Co-expression gene network
... Hi Mohita! For CEMiTool, you must provide a data.frame containing expression data with genes in rows and samples in columns, as can be seen from the image below, taken from the webCEMiTool [website][1]: ![enter image description here][2] [1]: https://cemitool.sysbio.tools/tutorial [2]: https: ...
written 21 days ago by pedrostrusso40
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Answer: A: Sample annotation for cemitool
... Sample annotation isn't required in CEMiTool. If you have no idea for what to use, you can just skip using it altogether, and just use the cemitool function as follows: cem <- cemitool(expr) where expr is your expression data with genes in the rows, samples in the columns, and gene names in the ...
written 7 months ago by pedrostrusso40
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Answer: A: Gene Set (enrichr) and Gene Interaction Data for CEMiTool
... Hi BELA, thanks for using CEMiTool! You can get some .gmt files from the MSigDB Collections available [here][1], including Reactome pathways. You can download several types of interaction files from a database such as [STRING][2]. As for the format, you should make sure that both your expression f ...
written 11 months ago by pedrostrusso40

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