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545
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Comment:
Comment: Shannon's Entropy by Sliding Window in R
2 days ago by
rohitsatyam102
▴ 690
0
votes
0
replies
811
views
Comment:
Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
3 days ago by
rohitsatyam102
▴ 690
0
votes
1
reply
811
views
Comment:
Comment: IQ-TREE stuck in selecting a substitution model with ModelFinder
26 days ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.4k
views
Comment:
Comment: Extract sequence subset from multiple sequence alignment based on position in a
29 days ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.4k
views
Comment:
Comment: CNVKit for unmatched tumor-only WGS samples
12 weeks ago by
rohitsatyam102
▴ 690
0
votes
0
replies
506
views
Comment:
Comment: driver genes per sample or per group?
3 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
260
views
bcftools unable to tag poor variant calls properly
bcftools
gatk
vafator
updated 3 months ago by
Pierre Lindenbaum
155k • written 3 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
2.5k
views
Comment:
Comment: Where is the documentation for PacBio tool bam2fastx?
3 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
492
views
Comment:
Comment: Tool to combine Germline Variant call from different variant callers
3 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
8.2k
views
Comment:
Comment: Picard Exception: Illegal Mate State
4 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
492
views
Comment:
Comment: Tool to combine Germline Variant call from different variant callers
4 months ago by
rohitsatyam102
▴ 690
0
votes
3
replies
492
views
Tool to combine Germline Variant call from different variant callers
haplotypecaller
gatk
snps
3 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
11k
views
Comment:
Comment: How to filter/view reads mapped to multiple locations using samtools or pysam
5 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
201
views
Queries regarding SARS-CoV2 GISAID Genomes Submission
wf-artic
COVID
GISAID
6 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
910
views
Comment:
Comment: how to pass trimmed fastP output to bwa in Nextflow
7 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
910
views
Comment:
Comment: how to pass trimmed fastP output to bwa in Nextflow
7 months ago by
rohitsatyam102
▴ 690
5
votes
5
replies
910
views
how to pass trimmed fastP output to bwa in Nextflow
fastp
bwa
nextflow
7 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
910
views
Comment:
Comment: how to pass trimmed fastP output to bwa in Nextflow
7 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.1k
views
Comment:
Comment: bcl2fastq dumps most of the reads as undetermined
7 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.1k
views
Comment:
Comment: bcl2fastq dumps most of the reads as undetermined
7 months ago by
rohitsatyam102
▴ 690
0
votes
4
replies
504
views
convert a list of plotly plots to an HTML output
ggplot2
bam
plotly
coverage
updated 7 months ago by
swbarnes2
13k • written 7 months ago by
rohitsatyam102
▴ 690
4
votes
4
replies
1.1k
views
bcl2fastq dumps most of the reads as undetermined
bcl2fastq
7 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
504
views
Comment:
Comment: convert a list of plotly plots to an HTML output
7 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.7k
views
Comment:
Comment: reduce space between X-axis ticks
7 months ago by
rohitsatyam102
▴ 690
2
votes
6
replies
1.7k
views
reduce space between X-axis ticks
R
GSEA
7 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.7k
views
Comment:
Comment: reduce space between X-axis ticks
7 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
1.7k
views
Comment:
Comment: reduce space between X-axis ticks
7 months ago by
rohitsatyam102
▴ 690
1
vote
0
replies
418
views
Tutorial:
Making LDA Score plot
LDA
metagenomics
8 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
15k
views
Comment:
Comment: RNA-Seq analysis using STAR and Salmon
8 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
226
views
Make parts of process run once and other parts as loop
nextflow
sars
nextclade
covid
9 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
484
views
Comment:
Comment: Nextflow printing help message even when params.help is false
9 months ago by
rohitsatyam102
▴ 690
4
votes
2
replies
484
views
Nextflow printing help message even when params.help is false
nextflow
align
bwa
alignment
9 months ago by
rohitsatyam102
▴ 690
0
votes
6
replies
724
views
Nextflow runs Successfully but output files are empty. How to debug?
nextflow
bcftools
10 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
724
views
Answer:
Answer: Nextflow runs Successfully but output files are empty. How to debug?
10 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
724
views
Comment:
Comment: Nextflow runs Successfully but output files are empty. How to debug?
10 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
724
views
Comment:
Comment: Nextflow runs Successfully but output files are empty. How to debug?
10 months ago by
rohitsatyam102
▴ 690
1
vote
1
reply
1.2k
views
Comment:
Comment: Fastqc in nextflow run only one pair of fastq.gz file and not on all Fastq files
10 months ago by
rohitsatyam102
▴ 690
3
votes
3
replies
1.2k
views
Fastqc in nextflow run only one pair of fastq.gz file and not on all Fastq files
nextflow
fastqc
updated 10 months ago by
ATpoint
73k • written 10 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.3k
views
Comment:
Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
10 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.3k
views
Comment:
Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
10 months ago by
rohitsatyam102
▴ 690
3
votes
5
replies
1.3k
views
Using shell command in Nextflow DSL=2 for BWA mem aligner
nextflow
alihnment
align
bwa
10 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
1.3k
views
Comment:
Comment: Using shell command in Nextflow DSL=2 for BWA mem aligner
10 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
622
views
Comment:
Comment: Online training - Introduction to Nextflow
10 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
3.1k
views
Comment:
Comment: Tutorial for analysing gpr files of microarray
10 months ago by
rohitsatyam102
▴ 690
3
votes
1
reply
361
views
GO Term Analysis in scRNASeq data with low number of genes expressed
scrnaseq
Seurat
updated 11 months ago by
mark.ziemann
★ 1.8k • written 11 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
2.3k
views
Comment:
Comment: Big difference in estimated duplicate reads between forward and reverse of paire
11 months ago by
rohitsatyam102
▴ 690
0
votes
1
reply
2.3k
views
Comment:
Comment: Big difference in estimated duplicate reads between forward and reverse of paire
12 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.4k
views
Comment:
Comment: How to use SingleR for annotating single-cell transcriptomics dataset with our o
13 months ago by
rohitsatyam102
▴ 690
0
votes
0
replies
1.7k
views
Comment:
Comment: How to select nFeature parameter of SelectIntegrationFeatures function in Seurat
14 months ago by
rohitsatyam102
▴ 690
4
votes
0
replies
1.8k
views
Forum:
Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat
scrnaseq
14 months ago by
rohitsatyam102
▴ 690
194 results • Page
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