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2
votes
3
replies
1.2k
views
Ambiguous fields in FANTOM 5 Enhancer_TSS_association.bed file
RNA-Seq gene genome
updated 4.7 years ago by ▴ 610 • written 4.7 years ago by ▴ 900
0
votes
0
replies
7.5k
views
Comment: C: Find consensus overlap between many bed files
4.7 years ago by rohitsatyam102 ▴ 900
1
vote
2
replies
1.1k
views
Sorting the BEd File
genome gene next-gen
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 900
0
votes
0
replies
610
views
From where to get Sub-telomeric Region Coordinates/ sequences for each chromosome
genome gene assembly Assembly ChIP-Seq
4.8 years ago by rohitsatyam102 ▴ 900
0
votes
0
replies
1.1k
views
Answer: C: Sorting the BEd File
4.8 years ago by rohitsatyam102 ▴ 900
0
votes
0
replies
18k
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Comment: C: TSS file for hg19
4.8 years ago by rohitsatyam102 ▴ 900
2
votes
1
reply
544
views
Greedy-Non greedy Pattern search
genome
4.8 years ago by rohitsatyam102 ▴ 900
0
votes
0
replies
18k
views
Comment: C: Reliable Fastq compression programs
4.8 years ago by rohitsatyam102 ▴ 900
1
vote
1
reply
248k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
4.9 years ago by rohitsatyam102 ▴ 900
0
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0
replies
248k
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Comment: C: Tools To Calculate Average Coverage For A Bam File?
4.9 years ago by rohitsatyam102 ▴ 900
7
votes
7
replies
2.1k
views
Different number of peaks between biological replicates?
sequencing ChIP-Seq replicates
updated 4.9 years ago by ★ 1.1k • written 4.9 years ago by ▴ 900
0
votes
0
replies
1.4k
views
Comment: C: MACS2 "total fragments in treatment" gives less number of fragments than expecte
4.9 years ago by rohitsatyam102 ▴ 900
2
votes
3
replies
1.4k
views
MACS2 "total fragments in treatment" gives less number of fragments than expected
ChIP-Seq next-gen genome
4.9 years ago by rohitsatyam102 ▴ 900
0
votes
0
replies
2.1k
views
Comment: C: Different number of peaks between biological replicates?
4.9 years ago by rohitsatyam102 ▴ 900
1
vote
0
replies
2.1k
views
Comment: C: Different number of peaks between biological replicates?
4.9 years ago by rohitsatyam102 ▴ 900
0
votes
1
reply
4.3k
views
Comment: C: Which one to use for ChipSeq replicate comparison: Spearman or Pearson
4.9 years ago by rohitsatyam102 ▴ 900
7
votes
5
replies
4.3k
views
Which one to use for ChipSeq replicate comparison: Spearman or Pearson
ChIP-Seq correlation replicates genome
updated 4.9 years ago by ★ 1.1k • written 4.9 years ago by ▴ 900
0
votes
1
reply
3.8k
views
Comment: C: Deeptools for ChIP-Seq
4.9 years ago by rohitsatyam102 ▴ 900
0
votes
0
replies
7.9k
views
Comment: C: What are chromatin states ?
4.9 years ago by rohitsatyam102 ▴ 900
1
vote
2
replies
1.6k
views
How to remove Mate mapped to a different chromosome
ChIP-Seq alignment samtools next-gen
updated 18 months ago by 44k • written 4.9 years ago by ▴ 900
0
votes
0
replies
1.8k
views
Comment: C: MarkDuplicates showing error, not recognising SM tag present in bam Header
4.9 years ago by rohitsatyam102 ▴ 900
0
votes
1
reply
3.0k
views
Comment: C: Problem while using BPGA-Version-1.3 for pan bacterial genome analysis
4.9 years ago by rohitsatyam102 ▴ 900
0
votes
0
replies
1.5k
views
Comment: C: How can I get Adapter information for SRR File from SRA ?
4.9 years ago by rohitsatyam102 ▴ 900
1
vote
0
replies
1.4k
views
Answer: A: NGS data analysis training
4.9 years ago by rohitsatyam102 ▴ 900
1
vote
3
replies
1.8k
views
MarkDuplicates showing error, not recognising SM tag present in bam Header
next-gen markduplicates picard alignment
updated 18 months ago by 44k • written 4.9 years ago by ▴ 900
0
votes
0
replies
1.2k
views
Comment: C: Do we have Alt Aware peak calling tools also?
5.0 years ago by rohitsatyam102 ▴ 900
4
votes
4
replies
1.2k
views
Do we have Alt Aware peak calling tools also?
ChIP-Seq alignment genome
5.0 years ago by rohitsatyam102 ▴ 900
0
votes
0
replies
3.0k
views
Comment: C: Problem while using BPGA-Version-1.3 for pan bacterial genome analysis
6.1 years ago by rohitsatyam102 ▴ 900
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