User: Bayram Sarilmaz

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Posts by Bayram Sarilmaz

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Interpretation of Overlapping p-value = 0 and Odss ratio = Inf
... I would like to conduct an enrichment analysis between two lists using GeneOverlap package in R. I am comparing gene IDs from each list, and there is no NAs in there. This is the code I'm using: go.obj <- newGeneOverlap(listA$ID,listB$ID) go.obj go.obj <- testGeneOverlap(go.obj) ...
R odds-ratio fisher's-exact geneoverlap written 18 hours ago by Bayram Sarilmaz0 • updated 17 hours ago by Santosh Anand3.7k
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Comment: C: Enrichment Analysis in R
... Thanks for explaining this! Then if the p-value from the above geneoverlap test is equal 0, it means there is no significant overlap between A and B? ...
written 6 days ago by Bayram Sarilmaz0
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Enrichment Analysis in R
... I have two gene sets: A and B. I would like to check which genes in B are enriched in A. As a result of the enrichment analysis, I to have a p-value for each gene in B. Here is a reproducible example that you can use: I'm performing the analysis of gene IDs. A = data.frame(c(100,200,300,400,50 ...
R genetics enrichment written 7 days ago by Bayram Sarilmaz0
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Comment: C: Enrichment Analysis in R
... Thanks for your answer! Could you please explain a bit more on how to use this package to end up with a set of genes that are enriched for category A? ...
written 13 days ago by Bayram Sarilmaz0
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Comment: C: Enrichment Analysis in R
... Edit added to the question. Please have a look ...
written 14 days ago by Bayram Sarilmaz0
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Enrichment Analysis in R
... I have two lists of cancer genes, the genes of list-1 belong to category A, while the genes in list-2 belong to category B. I would like to perform an enrichment analysis to check whether or not category A has a enrichment of cancer genes. Some genes are present in both categories A & B, so I t ...

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