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963
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Comment:
Comment: how to get methylated fragments (CpG regions) for only ONE sample using DMAP
2.9 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
1.8k
views
Comment:
Comment: DMAP for RRBS generate blank output
2.9 years ago by
iraia.munoa
▴ 130
0
votes
2
replies
2.8k
views
From Bismark to methylkit, which file is better to use?
Bisulfite sequencing
Bismark
methylkit
updated 6 weeks ago by
LluĂs R.
★ 1.2k • written 3.9 years ago by
iraia.munoa
▴ 130
1
vote
0
replies
942
views
Comment:
Comment: How to change CpG methylation cutoffs in edgeR
3.3 years ago by
iraia.munoa
▴ 130
1
vote
0
replies
699
views
Comparison of Bisulfite sequencing results with Methylkit and edgeR
edgeR
sequencing
Bisulfite
methylkit
3.5 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
948
views
Comment:
C: Problems with readBismark2DGE when uploading data
3.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
948
views
Comment:
C: Problems with readBismark2DGE when uploading data
3.8 years ago by
iraia.munoa
▴ 130
1
vote
4
replies
948
views
Problems with readBismark2DGE when uploading data
edgeR
Bisulfite sequencing
3.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
11k
views
Answer:
A: HISAT2 indexes, GRCm38 or mm10?
4.5 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
3.7k
views
Comment:
A: Bisulfite Analysis With Illumina Fastq From Different Lanes
4.5 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
2.3k
views
Comment:
C: CPM plot for individual genes
5.5 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
2.3k
views
Comment:
C: CPM plot for individual genes
updated 5.5 years ago by
ATpoint
85k • written 5.5 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
38k
views
Comment:
C: output TMM normalized counts with edgeR
5.5 years ago by
iraia.munoa
▴ 130
2
votes
4
replies
2.3k
views
CPM plot for individual genes
RNA-Seq
CPM
edgeR
TMM
updated 5.5 years ago by
ATpoint
85k • written 5.5 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
746
views
Association database between repetitive elements and ncRNAs
Repetitive elements
ncRNAs
lncRNAS
miRNAs
5.6 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
2.9k
views
Comment:
A: Oligo: GeneChip miRNA 4.0 analysis only returns control probes
5.6 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
2.6k
views
Comment:
C: Problems with the reference genome in Stringtie
5.7 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
2.6k
views
Comment:
C: Problems with the reference genome in Stringtie
5.7 years ago by
iraia.munoa
▴ 130
0
votes
5
replies
2.6k
views
Problems with the reference genome in Stringtie
Stringtie
RNA-Seq
lncRNA
Reference Genome
updated 5.7 years ago by
Devon Ryan
104k • written 5.7 years ago by
iraia.munoa
▴ 130
1
vote
0
replies
1.8k
views
Comment:
C: Not clustered terms in david ontology functional annotation clustering
5.7 years ago by
iraia.munoa
▴ 130
2
votes
2
replies
1.8k
views
Not clustered terms in david ontology functional annotation clustering
david ontology
functional annotation clustering
updated 5.8 years ago by
Kevin Blighe
88k • written 5.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
3.1k
views
Read coverage normalization
RNAseq
bamCoverage
read coverage normalization
5.8 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
23
votes
23
replies
11k
views
6 follow
How to see if adjusting batch effect in RNA-seq is working or not
RNA-Seq
removeBatchEffect
batch-effect
edger
updated 6 months ago by
Ram
44k • written 5.8 years ago by
iraia.munoa
▴ 130
1
vote
0
replies
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
11k
views
Comment:
C: How to see if adjusting batch effect in RNA-seq is working or not
5.8 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
1.6k
views
FEELnc and how to work with the results
FEELnc
RNA-Seq
lncRNA
5.9 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
2.3k
views
Different options tryed with DiffBind and did not know what final result believe
ChIP-Seq
DiffBind
R
edgeR
DESeq2
5.9 years ago by
iraia.munoa
▴ 130
2
votes
1
reply
1.4k
views
RNA-seq samples along different time points, how to run Stringtie?
RNA-Seq
time-point
stringtie
updated 6.1 years ago by
grant.hovhannisyan
★ 2.6k • written 6.1 years ago by
iraia.munoa
▴ 130
0
votes
1
reply
2.9k
views
Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
RNA-Seq
Assembly
IGV
Ballgown
updated 6.1 years ago by
Ram
44k • written 6.1 years ago by
iraia.munoa
▴ 130
0
votes
0
replies
103k
views
Comment:
Comment: Number of mapped reads from BAM file
updated 2.4 years ago by
Ram
44k • written 6.3 years ago by
iraia.munoa
▴ 130
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