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Comment: Comment: how to get methylated fragments (CpG regions) for only ONE sample using DMAP
21 months ago by iraia.munoa ▴ 130
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1.6k
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Comment: Comment: DMAP for RRBS generate blank output
21 months ago by iraia.munoa ▴ 130
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1
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2.0k
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From Bismark to methylkit, which file is better to use?
Bisulfite sequencing Bismark methylkit
updated 2.1 years ago by ▴ 510 • written 2.8 years ago by ▴ 130
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0
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757
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Comment: Comment: How to change CpG methylation cutoffs in edgeR
2.2 years ago by iraia.munoa ▴ 130
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0
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495
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Comparison of Bisulfite sequencing results with Methylkit and edgeR
edgeR sequencing Bisulfite methylkit
2.3 years ago by iraia.munoa ▴ 130
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594
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Comment: C: Problems with readBismark2DGE when uploading data
2.7 years ago by iraia.munoa ▴ 130
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0
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594
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Comment: C: Problems with readBismark2DGE when uploading data
2.7 years ago by iraia.munoa ▴ 130
1
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4
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594
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Problems with readBismark2DGE when uploading data
edgeR Bisulfite sequencing
2.7 years ago by iraia.munoa ▴ 130
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0
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10k
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Answer: A: HISAT2 indexes, GRCm38 or mm10?
3.4 years ago by iraia.munoa ▴ 130
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1
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3.2k
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Comment: A: Bisulfite Analysis With Illumina Fastq From Different Lanes
3.4 years ago by iraia.munoa ▴ 130
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1.9k
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Comment: C: CPM plot for individual genes
4.4 years ago by iraia.munoa ▴ 130
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1
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1.9k
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Comment: C: CPM plot for individual genes
updated 4.4 years ago by 77k • written 4.4 years ago by ▴ 130
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0
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34k
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Comment: C: output TMM normalized counts with edgeR
4.4 years ago by iraia.munoa ▴ 130
2
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4
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1.9k
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CPM plot for individual genes
RNA-Seq CPM edgeR TMM
updated 4.4 years ago by 77k • written 4.4 years ago by ▴ 130
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0
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591
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Association database between repetitive elements and ncRNAs
Repetitive elements ncRNAs lncRNAS miRNAs
4.5 years ago by iraia.munoa ▴ 130
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1
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2.5k
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Comment: A: Oligo: GeneChip miRNA 4.0 analysis only returns control probes
4.5 years ago by iraia.munoa ▴ 130
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1
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2.2k
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Comment: C: Problems with the reference genome in Stringtie
4.6 years ago by iraia.munoa ▴ 130
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1
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2.2k
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Comment: C: Problems with the reference genome in Stringtie
4.6 years ago by iraia.munoa ▴ 130
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5
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2.2k
views
Problems with the reference genome in Stringtie
Stringtie RNA-Seq lncRNA Reference Genome
updated 4.6 years ago by 103k • written 4.6 years ago by ▴ 130
1
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0
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1.4k
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Comment: C: Not clustered terms in david ontology functional annotation clustering
4.6 years ago by iraia.munoa ▴ 130
2
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2
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1.4k
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Not clustered terms in david ontology functional annotation clustering
david ontology functional annotation clustering
updated 4.7 years ago by 86k • written 4.7 years ago by ▴ 130
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0
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2.8k
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Read coverage normalization
RNAseq bamCoverage read coverage normalization
4.7 years ago by iraia.munoa ▴ 130
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1
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
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23
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8.7k
views
6 follow
How to see if adjusting batch effect in RNA-seq is working or not
batch effect edger removeBatchEffect RNA-Seq
updated 4.7 years ago by 8.2k • written 4.7 years ago by ▴ 130
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0
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
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0
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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1
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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0
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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1
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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1
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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0
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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0
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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1
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8.7k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
4.7 years ago by iraia.munoa ▴ 130
0
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0
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1.4k
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FEELnc and how to work with the results
FEELnc RNA-Seq lncRNA
4.8 years ago by iraia.munoa ▴ 130
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0
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2.1k
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Different options tryed with DiffBind and did not know what final result believe
ChIP-Seq DiffBind R edgeR DESeq2
4.8 years ago by iraia.munoa ▴ 130
2
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1
reply
1.2k
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RNA-seq samples along different time points, how to run Stringtie?
RNA-Seq time-point stringtie
updated 5.0 years ago by ★ 2.5k • written 5.0 years ago by ▴ 130
0
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1
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2.6k
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
RNA-Seq Assembly IGV Ballgown
updated 5.0 years ago by 40k • written 5.0 years ago by ▴ 130
0
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0
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90k
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Comment: Comment: Number of mapped reads from BAM file
updated 15 months ago by 40k • written 5.2 years ago by ▴ 130
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