User: Little.G

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Little.G0
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Posts by Little.G

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Analysis DEGs by edgeR glm using R version 3.4.4
... Hello everybody I'm working about analysis of DEGs in multiple organs of my plant. I just want to ask that can i use "edgeR glm" in R version 3.4.4? I'm not sure if it allows on classic edgeR only. please gimme some suggestion thank you in advance ...
R rna-seq sequencing written 12 months ago by Little.G0
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DEGs analysis of RNA-seq multiple conditions
... I would like to compare RNA-seq data from 4 different cells of my plant. I did all the upstream processes, then i'm doing the statistic analysis of DEGs now. I only have a script using edgeR for pairwise analysis. But i would like to do statistic test with all my data at once (in my idea >> A ...
rna-seq sequencing written 13 months ago by Little.G0
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Comment: C: How can i get a merge fastq file from sratoolkit like the file i directly downlo
... Thank you so much. It's really faster !! Finally,If i want to analyze for DEGs, is there a step should i combine the two reads together? I used to practice on a single read (in my class). I compared gene expression in rice planting in two conditions(triplicate each). ...
written 16 months ago by Little.G0
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How can i get a merge fastq file from sratoolkit like the file i directly download from ncbi?
... Excuse me, everybody. I am a new one here and also this field. I need help a lot .T-T Parts of my story... I downloaded SRR__.sra file from ncbi using sra toolkit. i used fastq-dump to convert SRR__.sra to fastq file and splitted file into 3 files : 1.SRR____1.fastq 2.SRR____2.fastq 3.SRR___.fas ...
rna-seq written 16 months ago by Little.G0 • updated 16 months ago by mmfansler320

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