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Has anyone tried "star --readFilesManifest manifest.tsv" and then "featureCounts --byReadGroup" to quickly get gene quantification for multiple sampl…
RNA-Seq STAR featureCounts
3.2 years ago by Xianjun ▴ 310
5
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10
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4.4k
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How to generate random genomic sequences that are GC- and length-matched to my input sequences?
sequence GC random background
updated 3.8 years ago by ▴ 30 • written 6.1 years ago by ▴ 310
2
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0
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2.2k
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Job: Research Scientist in Bioinformatics - Brigham and Women's Hospital, Harvard Medical School
Genomics Neuroscience Boston
updated 10 months ago by 43k • written 4.1 years ago by ▴ 310
0
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1
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45k
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Comment: C: Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
updated 4.5 years ago by 43k • written 11.4 years ago by ▴ 310
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4.4k
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Comment: C: How to generate random genomic sequences that are GC- and length-matched to my i
6.1 years ago by Xianjun ▴ 310
0
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0
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4.4k
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Comment: C: How to generate random genomic sequences that are GC- and length-matched to my i
6.1 years ago by Xianjun ▴ 310
0
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1
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4.4k
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Comment: C: How to generate random genomic sequences that are GC- and length-matched to my i
6.1 years ago by Xianjun ▴ 310
2
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1
reply
17k
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Answer: A: heatmap.2 reorder branches
6.8 years ago by Xianjun ▴ 310
4
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0
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15k
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Answer: A: Illumina'S Genome Studio Final Report: Forward Or Top Allele?
7.5 years ago by Xianjun ▴ 310
6
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5
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5.8k
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Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
cufflinks
updated 8.3 years ago by ▴ 170 • written 10.4 years ago by ▴ 310
0
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0
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10.0k
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Comment: Comment: How to correctly use the color option in R image() function?
updated 14 months ago by 43k • written 8.9 years ago by ▴ 310
9
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3
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10.0k
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How to correctly use the color option in R image() function?
R image
updated 14 months ago by 43k • written 8.9 years ago by ▴ 310
3
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0
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10.0k
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Answer: Answer: How to correctly use the color option in R image() function?
updated 14 months ago by 43k • written 8.9 years ago by ▴ 310
1
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0
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22k
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Answer: Answer: Bed File With Introns Only
updated 2.9 years ago by 43k • written 9.0 years ago by ▴ 310
3
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0
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4.1k
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Are the rlog or VST values from DESeq2 comparable across genes?
DESeq2
updated 23 months ago by 43k • written 9.1 years ago by ▴ 310
0
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0
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44k
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Comment: Comment: Why Are There Many Rna-Seq Hits To Intronic Regions?
updated 24 months ago by 43k • written 9.2 years ago by ▴ 310
3
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1
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3.9k
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Answer: Answer: How To Generate Random Size Matched Background Regions
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 310
0
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4
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3.9k
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cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in the tracking_id column
Cufflinks isoforms.fpkm_tracking RNA-Seq
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 310
0
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0
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3.9k
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Comment: Comment: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 310
0
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0
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3.9k
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Comment: C: cufflinks output file isoforms.fpkm_tracking has mixed ENSGxxx and ENSTxxx ID in
9.8 years ago by Xianjun ▴ 310
27
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8
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11k
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7 follow
Any Quick Sort Method For Large Bed File As 20G In Size?
sort bed
updated 12 weeks ago by ▴ 530 • written 11.1 years ago by ▴ 310
0
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0
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3.5k
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Job: Computational Biologist In Brain Research, Harvard Medical School, Boston, Us
bioinformatician postdoc
updated 13 months ago by 43k • written 10.2 years ago by ▴ 310
0
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0
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5.8k
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Answer: A: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
10.4 years ago by Xianjun ▴ 310
0
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0
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5.8k
views
Comment: C: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
10.4 years ago by Xianjun ▴ 310
0
votes
0
replies
5.8k
views
Comment: C: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
10.4 years ago by Xianjun ▴ 310
0
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0
replies
11k
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Comment: C: Any Quick Sort Method For Large Bed File As 20G In Size?
11.1 years ago by Xianjun ▴ 310
0
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1
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11k
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Comment: C: Any Quick Sort Method For Large Bed File As 20G In Size?
11.1 years ago by Xianjun ▴ 310
1
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0
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45k
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Comment: C: Extracting Read Count For Each Gene/Exon From Rna-Seq Bam Files
11.4 years ago by Xianjun ▴ 310
1
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0
replies
9.2k
views
Answer: A: A Question About The Sam Entry For A Query Aligned To Multiple Places
11.8 years ago by Xianjun ▴ 310
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