Moderator: JC

gravatar for JC
JC10k
Reputation:
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Location:
Mexico
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http://about.me/jcabal...
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8 years, 2 months ago
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Computational Biologist

Posts by JC

<prev • 996 results • page 2 of 100 • next >
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Comment: C: How to efficiently find drugs targeting specific genes in a high throughput?
... Check https://www.opentargets.org/ ...
written 17 days ago by JC10k
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Answer: A: picard error in trinty pipeline
... The script is asking for the $PICARD_HOME variable, then you need to create it: export PICARD_HOME="$HOME/picard-2.23.0" ...
written 18 days ago by JC10k
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Answer: A: Whole-Exome Analysis on a Mainstream Desktop PC
... In some projects I set up some desktop machines for analysis RNA-seq, WES and bacterial/virus assembly, the gaming machines are good for this. No surprises here. ...
written 22 days ago by JC10k
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Comment: C: featureCounts on antisense genes
... ask the developers http://bioinf.wehi.edu.au/contacts/index.html ...
written 23 days ago by JC10k
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Answer: C: How to get GTF file of virus genome
... 1. Get the GFF3 file from NCBI (use the Sent to -> Complete record -> File -> Format GFF3) 2. Convert the GFF3 to GTF, you can use BioPerl/BioPython for that ...
written 23 days ago by JC10k
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Comment: C: Csv. To VCF. File convert
... Yes, that is not a CSV, seems to be regular text, please clarify. To generate a VCF you will need to parse the file and the Genome sequence used to do the variant call or array design, use the VCF format [spec definition][1] to create a translator. [1]: https://samtools.github.io/hts-specs/VC ...
written 24 days ago by JC10k
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Answer: A: Compare pairs of key/value of perl hash tables in thre input files
... Not sure if this is what you need: #!/usr/bin/perl use strict; use warnings; $ARGV[2] or die "use interactions.pl FILE1 FILE2 FILE3 > OUT\n"; my $file1 = shift @ARGV; my $file2 = shift @ARGV; my $file3 = shift @ARGV; my %set1 = (); my %set ...
written 24 days ago by JC10k
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Comment: C: Count pooled sequencing barcode in fastq
... If you open-source and share your code on Github/GitLab, any one can help you to optimize it ...
written 24 days ago by JC10k
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Comment: C: repeatmasker .out files of Mus_musculus.GRCm38.dna_rm
... UCSC provide them here http://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/ ...
written 24 days ago by JC10k
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Comment: C: segmentation fault in Bayenv2
... A segmentation fault could be produced by many things, the most common one is not enough memory to allocate variables. ...
written 24 days ago by JC10k

Latest awards to JC

Teacher 17 days ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 17 days ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 9 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 10 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 10 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 11 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 12 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Cylon 3 months ago, received 1,000 up votes.
Scholar 3 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 3 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Programming Challenge - Synthetic Whole Genome Vcf
Scholar 4 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Appreciated 4 months ago, created a post with more than 5 votes. For A: Programming Challenge - Synthetic Whole Genome Vcf
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 5 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 6 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 6 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Popular Question 7 months ago, created a question with more than 1,000 views. For Bioinformatician, Cellnetix Pathology And Laboratories, Seattle, Wa
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 8 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome

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