User: maxininfa

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maxininfa0
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Posts by maxininfa

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Comment: C: Affymetrix Probe detection call
... At the section: Microarray data analysis "To decide whether a signal was significantly above background, the MAS 5.0 algorithm was applied to calculate probe set detection calls. " ...
written 7 months ago by maxininfa0
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Comment: C: Affymetrix Probe detection call
... Hi Kevin, thanks for your answer. I think I found the filtering made on the paper explained on this one https://f1000research.com/articles/5-1384/v2 Under the section: Filtering based on intensity I cut down from ~46k probs to ~27k but with the thresholds I assumed were correct. What do you think? ...
written 7 months ago by maxininfa0
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Affymetrix Probe detection call
... Hello, I'm interested on replicating the analysis made on the paper "[Pancreatic cancer circulating tumour cells express a cell motility gene signature that predicts survival after surgery.][1]" . I'm having trouble understanding the filtration made explained like this: ***Gene expression analysis* ...
probes quality control rna-seq affymetrix written 7 months ago by maxininfa0
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Comment: C: Biopython Entrez Esearch FILTER
... Seems you are right! Thx!!! ...
written 12 months ago by maxininfa0
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Biopython Entrez Esearch FILTER
... Hi, I want to make a seach using Biopython's Entrez API, i have the following code: handle = Entrez.esearch(db='pubmed', sort='relevance', retmax='20', retmode='xml', ...
esearch biopython written 12 months ago by maxininfa0 • updated 12 months ago by finswimmer12k

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