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0
votes
2
replies
251
views
Regions not clear in VCF
whole-exome variant-calling
updated 10 days ago by 43k • written 11 days ago by ▴ 60
0
votes
5
replies
638
views
Confirming called variants
GATK gnomAD
updated 5 months ago by ★ 2.1k • written 5 months ago by ▴ 60
0
votes
0
replies
311
views
Visualize tfrecords file from Deepvariant
gzipped flow tensor Deepvariant records
11 months ago by priya.bmg ▴ 60
1
vote
2
replies
601
views
Sequencing old DNA samples
Sequencing
17 months ago by priya.bmg ▴ 60
0
votes
1
reply
513
views
Pandas Data Frame
vcf GATK-SV pandas annotation
updated 18 months ago by ▴ 410 • written 18 months ago by ▴ 60
1
vote
5
replies
739
views
Coexpression analysis
CEMitool R
updated 10 months ago by 43k • written 18 months ago by ▴ 60
1
vote
4
replies
727
views
Loading Traitdata file for WGCNA analysis
R WGCNA
updated 13 months ago by 43k • written 18 months ago by ▴ 60
0
votes
0
replies
359
views
Gene prioritization
MAGMA gene-prioritization
updated 10 months ago by 43k • written 19 months ago by ▴ 60
2
votes
4
replies
1.8k
views
PacBio Raw Data File Formats
PacBio
updated 13 months ago by 43k • written 20 months ago by ▴ 60
0
votes
1
reply
934
views
Pacbio workflow
structural pbsv variants
updated 21 months ago by ▴ 40 • written 2.3 years ago by ▴ 60
0
votes
2
replies
571
views
Bacterial contamination in human DNA sample
Long-read-sequencing Bacterial-contamination
updated 13 days ago by 43k • written 22 months ago by ▴ 60
0
votes
0
replies
387
views
Methylation calling -Primrose Package
Methylation CIGAR PacBio
22 months ago by priya.bmg ▴ 60
1
vote
2
replies
703
views
Hard filtering variants
whole exome data
2.2 years ago by priya.bmg ▴ 60
3
votes
8
replies
1.8k
views
Lockfile command not found
Oslo Lockfile conda concurrency
20 months ago by priya.bmg ▴ 60
0
votes
0
replies
566
views
Snakemake workflow-PacBio
Snakemake PacBio
2.3 years ago by priya.bmg ▴ 60
0
votes
1
reply
982
views
Filtering of rare variants
filtering Rare variants
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 60
1
vote
2
replies
1.1k
views
Shared variants
filtering variants GATK
updated 2.4 years ago by ▴ 480 • written 2.4 years ago by ▴ 60
0
votes
1
reply
626
views
Post filtering analysis for exome data
shared rare Hard-filtering variants
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 60
0
votes
0
replies
456
views
False negatives -Hard filtering
calling Variant GATK Exome Concordance
2.4 years ago by priya.bmg ▴ 60
0
votes
1
reply
556
views
Individual or joint variant call ing
exome Filtering analysis variants
updated 2.5 years ago by ▴ 830 • written 2.5 years ago by ▴ 60
0
votes
1
reply
557
views
Preprocessing exome sequence
Analysis workflow-Germline GATK Variant
updated 2.6 years ago by 81k • written 2.6 years ago by ▴ 60
0
votes
0
replies
625
views
Error in merged bam files
picard GATK NGS
2.6 years ago by priya.bmg ▴ 60
0
votes
1
reply
635
views
Mark duplicates the bam files sorted by coordinates
Spark duplicates Mark
updated 2.6 years ago by 3.9k • written 2.6 years ago by ▴ 60
0
votes
9
replies
2.0k
views
Exec format error in unmapped bam file
bam samtools
updated 13 months ago by 43k • written 2.6 years ago by ▴ 60
3
votes
7
replies
2.2k
views
Snakemake bwa mem
Snakemake bwa
updated 16 months ago by 43k • written 2.6 years ago by ▴ 60
1
vote
11
replies
2.6k
views
Snakemake-Aligment using BWA-MEM2
memory-issue Snakemake
updated 2.6 years ago by ▴ 310 • written 2.7 years ago by ▴ 60
2
votes
1
reply
607
views
Base Recalibration -Second recalibration table
base GATK NGS recalibration
updated 17 months ago by • 0 • written 2.7 years ago by ▴ 60
1
vote
1
reply
694
views
Base recalibration -Java run time error and no sequence dictionary
base GATK NGS recalibration
updated 2.7 years ago by ▴ 830 • written 2.7 years ago by ▴ 60
3
votes
7
replies
2.5k
views
Read group info
BWA bwa-mem2
updated 2.7 years ago by ▴ 20 • written 2.7 years ago by ▴ 60
2
votes
11
replies
6.5k
views
Alignment using bwa-mem2
alignment bwa-mem2
2.7 years ago by priya.bmg ▴ 60
1
vote
3
replies
1.6k
views
Read group info
info read BWA group bwa-mem2
updated 2.7 years ago by 141k • written 2.7 years ago by ▴ 60
1
vote
2
replies
943
views
Remove adpater from reads
trimming adpater cutadapt
updated 2.7 years ago by ★ 2.2k • written 2.7 years ago by ▴ 60
4
votes
3
replies
1.4k
views
Decoy sequence for human reference GRCh38 assembly
reference genome Decoy assembly Human
updated 2.7 years ago by ★ 1.1k • written 2.7 years ago by ▴ 60
2
votes
5
replies
1.8k
views
Reference file for base recalibration
base NGS recalibration preprocessing GATK
2.7 years ago by priya.bmg ▴ 60
2
votes
2
replies
1.1k
views
Mark Duplicates
picard GATK NGS
2.7 years ago by priya.bmg ▴ 60
2
votes
12
replies
2.1k
views
Bowtie2 aligner
Bowtie2 alignment
updated 2.7 years ago by 141k • written 2.7 years ago by ▴ 60
1
vote
1
reply
544
views
Random Boolean network with same input nodes as original network
random Boolen network Genetic regulatory network
updated 3.4 years ago by 27k • written 3.4 years ago by ▴ 60
4
votes
7
replies
1.5k
views
Access metadata in GEO expression datasets
GEO Gene expression R
3.5 years ago by priya.bmg ▴ 60
2
votes
4
replies
753
views
Time steps in node perturbation analysis
Perturbation Simulations Expression time steps
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 60
0
votes
0
replies
742
views
Allelic variation in a population
Conserved allelic variation
updated 5.3 years ago by 141k • written 5.3 years ago by ▴ 60
0
votes
0
replies
926
views
miRNA nomenclature for mature miRNA sequence
RNA-Seq
updated 5.7 years ago by 47k • written 5.7 years ago by ▴ 60
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