User: gizone1

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gizone120
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Posts by gizone1

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Comment: C: Iterating through paired-end reads in samtools / pysam
... I use this function anytime I need to iterate in pairs... I've used it on a number of BAMs. Hope it helps! ...
written 5 months ago by gizone120
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Answer: A: Iterating through paired-end reads in samtools / pysam
... My method puts reads into a dictionary and will output reads once a pair is found. Usually pairs are near each other so the dictionary shouldn't get that big. from collections import defaultdict import pysam def read_pair_generator(bam, region_string=None): """ Generat ...
written 6 months ago by gizone120

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