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Posts by gizone1
... I use this function anytime I need to iterate in pairs... I've used it on a number of BAMs. Hope it helps! ...
... My method puts reads into a dictionary and will output reads once a pair is found. Usually pairs are near each other so the dictionary shouldn't get that big. from collections import defaultdict import pysam def read_pair_generator(bam, region_string=None): """ Generat ...
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