User: ahir29

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ahir290
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Posts by ahir29

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Comment: C: Python Programmatically obtaining the corresponding wildtype DNA sequence of a R
... Yup, i see the same thing. You are right, I am find the etuils hit and miss. I am resorting to webscraping the ipg page now. No other choice. ...
written 5 days ago by ahir290
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Comment: C: Python Programmatically obtaining the corresponding wildtype DNA sequence of a R
... Is there no way to use the Entrez utils wrapper in biopython to access the "identical proteins" link ? I.e for https://www.ncbi.nlm.nih.gov/protein/WP_010594839.1 ; this would lead to "https://www.ncbi.nlm.nih.gov/ipg/?term=WP_010594839.1" ; where any of the entries there gets me to a page which has ...
written 7 days ago by ahir290
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Comment: C: Python Programmatically obtaining the corresponding wildtype DNA sequence of a R
... Thanks genomax - I cant believe my vigilant googling didnt get me to that page explaining where all the transcripts of a reference seq is kept! Need to improve my searching skills:) I am assuming now using the Entrez etuils wrapper in Biopython can get me the necessary transcripts. I will take a loo ...
written 7 days ago by ahir290
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Python Programmatically obtaining the corresponding wildtype DNA sequence of a RefSeq Protein Identifier (e.g WP_016693432.1)
... Dear All, The question is quite self explanatory - what is the easiest way (using python) to get the corresponding DNA sequence from which the translated protein sequence is available in the RefSeq NCBI database. For example, I have a fasta file after a blast search - >WP_010594 ...
database refseq mapping transcript dna written 7 days ago by ahir290 • updated 7 days ago by genomax54k

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