User: btsui

gravatar for btsui
btsui290
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290
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Trusted
Location:
UCSD
Website:
https://brianyiktaktsu...
Last seen:
7 months, 4 weeks ago
Joined:
11 months, 1 week ago
Email:
b****@eng.ucsd.edu

Posts by btsui

<prev • 35 results • page 1 of 4 • next >
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Comment: C: How to map GWAS-Catalog traits to ICD-10 or ICD-9?
... ICD codes are diagnosis. Can u clarify on ur question? ...
written 8 months ago by btsui290
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Comment: C: [Crushing the bureaucracy in bioinformatics] Introducing Skymap-JupyterHub: acce
... I have all of them. If people ended up using most of the organism other than mouse and human I will upload all of them. Edit: It's not all per se, I am somewhat concerned about uploading the prokaryotic which are often associated with higher evolution rate, which makes me doubt whether a reference ...
written 9 months ago by btsui290
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Comment: C: Text mining in PDFs
... pdftotext is the best soln I have tried so far. ...
written 9 months ago by btsui290
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Answer: A: Extract start coordinate from read 1 and end coordinate from read 2 of paired en
... cut -d' ' -f1-3 inputfile > outputfile ...
written 10 months ago by btsui290 • updated 10 months ago by finswimmer11k
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Comment: C: Is it correct to pool transcriptomes coming from different experiment for DE ana
... Q: Is it methodologically safe to compare differential expression levels across different experiments? A: I did this exercise myself. In summary, I think it is possible, but it is usually non-trivial. The answer depends a lot on the kind of differential expression analysis that you are want to do ...
written 10 months ago by btsui290
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Comment: C: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing
... I am sorry about this. ...
written 10 months ago by btsui290
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Comment: C: Introducing Skymap: Allelic read counts extracted from 250,000 human sequencing
... If I am not mistaken, one of the moderators told me that bumping once per day is fine. If that is a problem, maybe you can email me directly to talk over the problem or clarify in the FAQ. Meanwhile, I will stop bumping the post. Hope this help. ...
written 10 months ago by btsui290
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Comment: C: Copy number differences between groups
... You might want to reference table 1 here and see which flavor you want [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394692/][1] [1]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394692/ ...
written 10 months ago by btsui290
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Answer: A: Tool that can split genes into groups with similar expression pattern overtime
... https://seaborn.pydata.org/tutorial/categorical.html ![enter image description here][1] [1]: https://seaborn.pydata.org/_images/categorical_42_0.png ...
written 10 months ago by btsui290
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Comment: C: How to normalize count data for PCA in R - something goes wrong
... PCA usually benefit from first z-scoring, which only make sense if you a normal distribution for the expression data. Typically take a simple cut off at 1 will do, as it is predominately the 0s that you don't want. Gene pattern recommended 1 read per million for the gene over n samples as the thres ...
written 10 months ago by btsui290

Latest awards to btsui

Scholar 11 months ago, created an answer that has been accepted. For A: Assembly of wheat genome
Scholar 11 months ago, created an answer that has been accepted. For A: Assembly of wheat genome

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