User: mahsa.saliani

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Posts by mahsa.saliani

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(Closed) lncRNA detection with compare.py
... Hi I download gene annotation and lnRNA annotation gft files from GENECODE. I have also a transcript.gft file as the output file of cufflinks. I got this error when using compare.py. Could you please help me to solve the problem. Thank you in advance Classification start: Traceback (most recent ca ...
cnci written 6 weeks ago by mahsa.saliani0 • updated 4 days ago by Biostar ♦♦ 20
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Comment: C: has anyone ever worked with the CNCI tool
... Hi I have the same problem as you. I download gene annotation and lnRNA annotation gft files from GENECODE. I have also a transcript.gft file as the output file of cufflinks. I got the same error when using compare.py. Could you please help me to solve the problem. Thank you in advance ...
written 6 weeks ago by mahsa.saliani0
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indexerror of afterqc for quality control
... I am trying to do quality control of my fastq files with afterqc. I had installed pypy successfully. But I see this error while I am trying to trimming. **IndexError: string index out of range** this is my command: pypy after.py --read1_file=/home/mahsa/Documents/HCT116/SRR1756569_1_fastqc.zip ...
software error rna-seq written 10 months ago by mahsa.saliani0 • updated 10 months ago by WouterDeCoster42k
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(Closed) Normalization for RNA seq
... What is normalization in RNA seq. What is the reason of normalization?what are the most useful tools for normalization? ...
rna-seq written 17 months ago by mahsa.saliani0

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