User: fec2

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fec220
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Posts by fec2

<prev • 48 results • page 1 of 5 • next >
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Comment: C: Local blastp option -qcov_hsp_perc
... Ya, 2 sets of proteins. I am using -subject option of blastp. ...
written 4 days ago by fec220
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Local blastp option -qcov_hsp_perc
... Hi all, I need to performed blastp for 2 genome (against each other). According to the paper, I need to get the number of protein which has "alignable region of the query protein sequence of more than 50%". For Blastp option, -qcov_hsp_perc should mean Percentage of Query Coverage Per HSP, right? ...
genome blast written 5 days ago by fec220
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Comment: C: Calculate percentage of local blast hit
... Thank you very much! ...
written 8 days ago by fec220
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Comment: C: Calculate percentage of local blast hit
... Hi, Thank you. However, the matrix doesn't have any label. Only has number and “.”. Could it be possible to have a label? Thanks again. ...
written 8 days ago by fec220
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Comment: C: Calculate percentage of local blast hit
... I m sorry, I missed out something important, the input blastp.txt should be: A B 123 B C 321 And is separate by tab. I am sorry that I missed out this part Is not A_B and B_C. ...
written 8 days ago by fec220
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Comment: C: Calculate percentage of local blast hit
... Could it be possible that the dataset has no self comparison? For example no A-A, B-B and C-C? ...
written 8 days ago by fec220
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Comment: C: Calculate percentage of local blast hit
... Hi, I got an error as below: cmd. line:1: (FILENAME=blastp_re.txt FNR=6) fatal: division by zero attempted ...
written 8 days ago by fec220
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Comment: C: Calculate percentage of local blast hit
... For example: A B C A 100 B 95 100 74 C 58 78 100 ...
written 9 days ago by fec220
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Comment: C: Calculate percentage of local blast hit
... Hi, I wonder is it possible to have the result in matrix format? Thank you. ...
written 9 days ago by fec220
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Comment: C: To get number of hits from blastp output file
... Hi, May I know where can I find the manual for the meaning of all these command? I am new in this field and but have no clue where to find all these information. Really appreciate your help. ...
written 9 days ago by fec220

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