User: fec2
fec2 • 20
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Posts by fec2
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... Thank you very much! ...
written 5 months ago by
fec2 • 20
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... Hi, I have tried searching it, but couldn't found exactly same issue, as what I want is a list of name of the missing fasta file. Do you have any idea what is the key word should I use to search for this issue? Thanks. ...
written 5 months ago by
fec2 • 20
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7 follow
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... Hi,
I have a multi fasta file that contains 453 fasta sequences that looks like the following:
>M.Bce12308ORF4755P GTWWAC
ATGCGTGACCTGATCGAAGAGCCGGGCGGCGGCGCCGCGAGCGAGGCGGAGGCGGTTCAGCCCGCCGCTGCCGTGCCGCGCGCGCTGCCGTCCGGTATCG
>M.Bce1254ORF9725P GTWWAC
ATGCGTGACCTGATCGAAGA ...
written 5 months ago by
fec2 • 20
• updated
5 months ago by
shenwei356 ♦ 5.0k
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... Ya, 2 sets of proteins. I am using -subject option of blastp. ...
written 6 months ago by
fec2 • 20
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... Hi all,
I need to performed blastp for 2 genome (against each other). According to the paper, I need to get the number of protein which has "alignable region of the query protein sequence of more than 50%".
For Blastp option, -qcov_hsp_perc should mean Percentage of Query Coverage Per HSP, right? ...
written 6 months ago by
fec2 • 20
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... Hi,
Thank you. However, the matrix doesn't have any label. Only has number and “.”. Could it be possible to have a label? Thanks again. ...
written 6 months ago by
fec2 • 20
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... I m sorry, I missed out something important, the input blastp.txt should be:
A B 123
B C 321
And is separate by tab. I am sorry that I missed out this part
Is not A_B and B_C. ...
written 6 months ago by
fec2 • 20
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... Could it be possible that the dataset has no self comparison? For example no A-A, B-B and C-C? ...
written 6 months ago by
fec2 • 20
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... Hi,
I got an error as below:
cmd. line:1: (FILENAME=blastp_re.txt FNR=6) fatal: division by zero attempted ...
written 6 months ago by
fec2 • 20
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9 months ago,
created a question with more than 1,000 views.
For How to concatenate multiple fasta file
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