User: mohammadalkadi0

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Posts by mohammadalkadi0

<prev • 6 results • page 1 of 1 • next >
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Answer: A: 3’UTR sequences for Saccharomyces Cerevisiae (yeast)
... You can Download UTR sequences from: https://downloads.yeastgenome.org/sequence/S288C_reference/SGD_all_ORFs_5prime_UTRs.fsa https://downloads.yeastgenome.org/sequence/S288C_reference/SGD_all_ORFs_3prime_UTRs.fsa ...
written 14 days ago by mohammadalkadi010
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Answer: A: The same location shares different GeneBank Accession in IGV and UCSC?
... Maybe you are using different assembly releases. make sure they are the same (for example ce11, ce10 ..etc) ...
written 28 days ago by mohammadalkadi010
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Answer: A: Seurat sctransform return.only.var.genes = FALSE
... I think it will use all genes. This is the code from their GitHub: if (return.only.var.genes & !conserve.memory) { scale.data <- vst.out$y[top.features, ] } else { scale.data <- vst.out$y } ...
written 28 days ago by mohammadalkadi010
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Comment: C: Nanopore SNP and indels calling tool
... I don't think nanopore is suitable for SNPs and indels. Maybe this is the reason why you won't find tools! ...
written 14 months ago by mohammadalkadi010
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Comment: C: tophat aligns to wrong strand
... However, when I did reverse-complement to the fastq file, i got almost identical results. ...
written 15 months ago by mohammadalkadi010
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Comment: C: tophat aligns to wrong strand
... I have the same problem. The real problem is the overlapped and opposite-oriented genes. I think the results will change but for the better. ...
written 15 months ago by mohammadalkadi010

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