User: alorsonmethyle

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Posts by alorsonmethyle

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How to calculate the entropy of a DNA sequence - and/or it's complexity
... Hi, I am trying to propose a way to show that a given sequence, given to another one is less/more complex. I would like to explain by this that some mapping issues can come from there. I'd like to show it with a 4 letters genome, and a 3 letters genome (bisulfite converted). I heard that shannon ...
genome R wgbs dna written 8 weeks ago by alorsonmethyle30 • updated 7 weeks ago by onestop_data200
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Which strategy to analyse scores on multiple DNA positions over samples ?
... Hi, I'm writing here today because I'm looking for a strategy to analyse my dataset. Rapidly, we have a dataset of WGBS, with methylation scores. In that subset, we're looking for methylation scores for 20 positions, which are low (between 0 and 5%) over >50 samples. I'd like to know whether it ...
dna methylation wgbs statistics written 12 weeks ago by alorsonmethyle30
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Comment: A: What statistical test for CpG DMR ?
... Thanks for your answers, it's really interesting :) I'll have a look to metilene. It would be pretty interesting actually to have with the same samples the differences in analysis with the different softwares/libs available. Does that exist already ? ...
written 19 months ago by alorsonmethyle30
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What statistical test for CpG DMR ?
... Hi to all, relatively new to bioinformatics, I found myself very interested in a remark made by Devon on that link about NOT using fisher's test for DMR : [Question: Dmr (Differentially Methylated Regions) Identification Software][1] [1]: https://www.biostars.org/p/88110/#88186 > There's n ...
epigenetics methylation statistical test dmr written 19 months ago by alorsonmethyle30

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