Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
1
vote
1
reply
252
views
Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-seq)
scRNA-seq
updated 5 months ago by 84k • written 5 months ago by ▴ 140
0
votes
0
replies
547
views
Specify the order of the sets in VennDiagram R?
VennDiagram R
18 months ago by Lucy ▴ 140
0
votes
2
replies
780
views
Move Cytoscape "CytoscapeConfiguration" directory
cytoscape
18 months ago by Lucy ▴ 140
0
votes
0
replies
780
views
Comment: Comment: Move Cytoscape "CytoscapeConfiguration" directory
18 months ago by Lucy ▴ 140
0
votes
0
replies
2.0k
views
Comment: Comment: Gini coefficient TCR repertoire
19 months ago by Lucy ▴ 140
0
votes
0
replies
629
views
Comment: Comment: How does --primary work with -M and --fractional options featureCounts?
2.5 years ago by Lucy ▴ 140
0
votes
2
replies
629
views
How does --primary work with -M and --fractional options featureCounts?
RNA-seq subread mapping featureCounts STAR
2.5 years ago by Lucy ▴ 140
0
votes
3
replies
2.3k
views
Comment: Comment: featureCounts parameters
2.5 years ago by Lucy ▴ 140
0
votes
0
replies
2.3k
views
Comment: Comment: featureCounts parameters
2.5 years ago by Lucy ▴ 140
1
vote
7
replies
2.3k
views
featureCounts parameters
RNA-seq featureCounts RNA-Seq
updated 2.4 years ago by 84k • written 2.6 years ago by ▴ 140
6
votes
2
replies
3.0k
views
Seurat sctransform - does anyone know of a good explanation for biologists?
Seurat scRNA-seq normalization
updated 2.8 years ago by ▴ 50 • written 2.8 years ago by ▴ 140
0
votes
0
replies
933
views
Why do we log transform and scale data prior to PCA for scRNA-seq analysis
Seurat log transformation scaling scRNA-seq
updated 2.9 years ago by 101k • written 2.9 years ago by ▴ 140
0
votes
0
replies
494
views
Goodness-of-fit test - observed vs. expected (some expected values < 5)
R stats goodness-of-fit
2.9 years ago by Lucy ▴ 140
5
votes
9
replies
5.1k
views
Which counts to use for RNA-seq heatmap and PCA?
RNA-seq heatmap EdgeR PCA
updated 3.0 years ago by 84k • written 4.8 years ago by ▴ 140
0
votes
1
reply
5.1k
views
Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
3.0 years ago by Lucy ▴ 140
0
votes
1
reply
5.1k
views
Comment: Comment: Which counts to use for RNA-seq heatmap and PCA?
3.0 years ago by Lucy ▴ 140
1
vote
1
reply
7.8k
views
Comment: Comment: GATK Input files reference and features have incompatible contigs: No overlappin
3.1 years ago by Lucy ▴ 140
0
votes
0
replies
789
views
Comment: Comment: Rename "SM" tag in read group only
3.1 years ago by Lucy ▴ 140
0
votes
0
replies
512
views
Add SM group STAR
samtools variant RNA-seq calling GATK STAR
3.1 years ago by Lucy ▴ 140
0
votes
0
replies
3.3k
views
Comment: Comment: Error with Seurat subset function
3.2 years ago by Lucy ▴ 140
1
vote
3
replies
3.3k
views
Error with Seurat subset function
Seurat scRNA-seq RNA-seq
3.2 years ago by Lucy ▴ 140
1
vote
4
replies
2.0k
views
Gini coefficient TCR repertoire
TCR-sequencing Gini
19 months ago by Lucy ▴ 140
0
votes
1
reply
2.0k
views
Comment: Comment: Gini coefficient TCR repertoire
3.3 years ago by Lucy ▴ 140
0
votes
1
reply
1.7k
views
Comment: Comment: Identification of modules of genes that vary over pseudotime (scRNA-seq pseudoti
3.4 years ago by Lucy ▴ 140
4
votes
3
replies
1.7k
views
Identification of modules of genes that vary over pseudotime (scRNA-seq pseudotime analysis)
modules scRNA-seq singlecell pseudotime RNA-seq
updated 3.4 years ago by ★ 17k • written 3.4 years ago by ▴ 140
0
votes
0
replies
1.1k
views
Comment: A: Negbinom vs. logistic regression for Seurat FindMarkers()
3.7 years ago by Lucy ▴ 140
0
votes
1
reply
1.1k
views
Negbinom vs. logistic regression for Seurat FindMarkers()
scRNA-seq RNA-seq Seurat
3.7 years ago by Lucy ▴ 140
0
votes
1
reply
4.2k
views
Comment: C: Differential expression analysis in Seurat
3.8 years ago by Lucy ▴ 140
2
votes
3
replies
4.2k
views
Differential expression analysis in Seurat
RNA-Seq scRNA-seq Seurat
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 140
0
votes
0
replies
1.9k
views
Comment: C: Correlation plot sized by another variable
4.1 years ago by Lucy ▴ 140
3
votes
11
replies
1.9k
views
Correlation plot sized by another variable
ggplot2 correlation plot corrplot
updated 4.1 years ago by 4.9k • written 4.1 years ago by ▴ 140
0
votes
1
reply
1.9k
views
Comment: C: Correlation plot sized by another variable
4.1 years ago by Lucy ▴ 140
0
votes
0
replies
1.9k
views
Comment: C: Correlation plot sized by another variable
4.1 years ago by Lucy ▴ 140
0
votes
1
reply
1.9k
views
Comment: C: Correlation plot sized by another variable
4.1 years ago by Lucy ▴ 140
0
votes
1
reply
1.9k
views
Comment: A: Correlation plot sized by another variable
4.1 years ago by Lucy ▴ 140
0
votes
0
replies
7.7k
views
Comment: C: findGenomeMotif.pl in Homer couldn't work properly
4.8 years ago by Lucy ▴ 140
0
votes
1
reply
5.6k
views
Comment: C: problem with HOMER findMotifsGenome.pl
4.8 years ago by Lucy ▴ 140
0
votes
0
replies
5.1k
views
Comment: C: Which counts to use for RNA-seq heatmap and PCA?
4.8 years ago by Lucy ▴ 140
0
votes
2
replies
5.1k
views
Comment: A: Which counts to use for RNA-seq heatmap and PCA?
4.8 years ago by Lucy ▴ 140
0
votes
0
replies
14k
views
Comment: C: biplot scaling options (ggbiplot)
4.8 years ago by Lucy ▴ 140
0
votes
1
reply
14k
views
Comment: A: biplot scaling options (ggbiplot)
4.8 years ago by Lucy ▴ 140
0
votes
4
replies
14k
views
biplot scaling options (ggbiplot)
biplot PCA ggbiplot
4.8 years ago by Lucy ▴ 140
0
votes
1
reply
1.3k
views
Comment: C: DEsingle differential-expression analysis
4.8 years ago by Lucy ▴ 140
3
votes
4
replies
1.3k
views
DEsingle differential-expression analysis
differential-expression analysis scRNA-seq
4.8 years ago by Lucy ▴ 140
0
votes
1
reply
3.8k
views
Comment: C: Seurat sctransform return.only.var.genes = FALSE
4.8 years ago by Lucy ▴ 140
4
votes
5
replies
3.8k
views
Seurat sctransform return.only.var.genes = FALSE
scRNA-seq Seurat sctransform
updated 4.8 years ago by ★ 17k • written 4.8 years ago by ▴ 140
1
vote
0
replies
3.8k
views
Comment: C: Seurat sctransform return.only.var.genes = FALSE
4.8 years ago by Lucy ▴ 140
1
vote
0
replies
5.6k
views
Comment: C: RNA velocity on 5' 10x data?
4.9 years ago by Lucy ▴ 140
0
votes
0
replies
5.6k
views
Comment: C: RNA velocity on 5' 10x data?
4.9 years ago by Lucy ▴ 140
5
votes
6
replies
5.6k
views
RNA velocity on 5' 10x data?
RNA-Seq scRNA-seq RNA velocity
updated 2.8 years ago by ▴ 10 • written 4.9 years ago by ▴ 140
83 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6