User: chentong.biology

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Posts by chentong.biology

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Comment: C: Retrieving Genomic Sequence Based On Coordinate Information From Annotation File
... I recommend keep the FASTA file unchanged. I do not understand what do you mean by many more characters than what appears in the browser's sliding window. Do you means the length of your FASTA sequence of one chromosome larger than the max coordinates of that chromosome in UCSC genome browser? ...
written 6.1 years ago by chentong.biology50
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Comment: C: Mirna Expression Differences Using Mirdeep2
... mirDeep2 normalizes miRNA expression versus total number of miRNA reads. You may try normalizing the read count of each data set to that data set’s count of tRNA-, snRNA-, scRNA-, and srpRNA-derived reads; as mentioned in article. ...
written 6.1 years ago by chentong.biology50
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Comment: C: Retrieving Genomic Sequence Based On Coordinate Information From Annotation File
... Agree. If you want to get the genome sequence for given coordinates, please try samtools faidx chromosome.fa chr1:1000-11000 as Pierre suggests. As you mentioned gene annotation file, if you want to get the transcripts file you can try gffread from cufflinks like gffread -w output.fa -g gename_ass ...
written 6.1 years ago by chentong.biology50
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Comment: C: What Tools Do You Used For Joining Pictures Into A Panel For Publish?
... I just wonder how do you add 'A', 'B', 'C', 'D' to the combined picture as published paper? Thanks! ...
written 6.5 years ago by chentong.biology50
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Comment: C: What Tools Do You Used For Joining Pictures Into A Panel For Publish?
... Thanks for supplying the choice. I think it is a great tool. ...
written 6.5 years ago by chentong.biology50
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Comment: C: What Tools Do You Used For Joining Pictures Into A Panel For Publish?
... Thanks, I will try it. ...
written 6.5 years ago by chentong.biology50
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Comment: C: What Tools Do You Used For Joining Pictures Into A Panel For Publish?
... Thanks for the hints! ...
written 6.5 years ago by chentong.biology50
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Comment: C: What Tools Do You Used For Joining Pictures Into A Panel For Publish?
... IamgeMagick is great. I will try it. Thanks! ...
written 6.5 years ago by chentong.biology50
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Comment: C: What Tools Do You Used For Joining Pictures Into A Panel For Publish?
... Latex is a great one. I used it sometime before. I will consider use it again. Thanks! ...
written 6.5 years ago by chentong.biology50
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What Tools Do You Used For Joining Pictures Into A Panel For Publish?
... Hi, everyone, I am using Microsoft PPT to paste several pictures together as a panel. However, the resolution will be decreased when outputting to tiff pictures. I wonder if there are other tools that can be used for this with resolution no affected. Could you please kindly suggest your favorite ...
written 6.5 years ago by chentong.biology50 • updated 6.5 years ago by Alex Reynolds29k

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