User: kingkenshin1997

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Posts by kingkenshin1997

<prev • 11 results • page 1 of 2 • next >
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Loading from pdb files using Pymol
... " pymol.cmd.load('ftp://ftp.wwpdb.org/pub/pdb/data/structures/all/pdb/pdb'+pdbId+'.ent.gz') " Every time i use the above command in succession ,the following pdb file gets loaded into the same state.. I want to know how can I clear the old state and work on it instead of creating a new state.? ...
gene code written 6 weeks ago by kingkenshin19970
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Spherical coordinates of 3D structure of gene
... Does anyone have any code to get the spherical coordinates of the 3D structure of gene(3D structure is in .pdb format)? ...
gene written 10 weeks ago by kingkenshin19970 • updated 9 weeks ago by Alex Reynolds27k
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Equirectangular projection of 3D structure of gene
... Does anyone have any code to basically get the equirectangular projection of the 3 D structure of gene(3D structures are in .pdb file format)? ...
gene written 10 weeks ago by kingkenshin19970 • updated 10 weeks ago by Alex Reynolds27k
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PDB ids and Ensembl ID for gene sequence
... Do the genes with same Ensembl id but different PDB ids have same gene sequence or different gene sequence? ...
gene pdb ensembl written 4 months ago by kingkenshin19970 • updated 11 weeks ago by Emily_Ensembl17k
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PDB ID To Ensemble ID
... How do i map a set of PDB ID's to ENSEMBLE ID's? This has to be done in bulk ...
gene written 4 months ago by kingkenshin19970 • updated 4 months ago by genomax62k
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Comment: C: 3D to voxel
... I am actually trying to implement a 3D convolutional model on the 3D structure of the gene . But since the data i have, is in pdb format i dont know how to get the voxel matrix from that data. ...
written 4 months ago by kingkenshin19970
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3D to voxel
... How do i generate a voxel matrix from a 3D structure of a gene present in .pdb format? ...
gene written 4 months ago by kingkenshin19970
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Gene Name from PDB id
... How do i retrieve the gene names from a list of PDB id's ? say for example: MAPK3 from 2ZOQ I would like to do it all at once ...
gene written 4 months ago by kingkenshin19970 • updated 4 months ago by genomax62k
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Human PDB ids
... How do i download all the PDB id's of genes of homosapiens/humans ? I would like to download them all at once ...
gene written 4 months ago by kingkenshin19970 • updated 4 months ago by genomax62k
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Comment: C: Gene 3D Data download
... I wanted to integrate it to a python script. Is there any api to download the 3D data all together? ...
written 5 months ago by kingkenshin19970

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