User: kingkenshin1997

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Posts by kingkenshin1997

<prev • 15 results • page 1 of 2 • next >
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Gene name to PDB id using Biopython
... How to get all the PDB ids from a genename using biopython? Is there any other library to do the same? Thanks in advance ...
gene written 23 months ago by kingkenshin19970 • updated 22 months ago by Biostar ♦♦ 20
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Protein Fold and PDB id
... Can a particular PDB id belong to multiple protein fold class? Thanks in advance ...
gene written 23 months ago by kingkenshin19970
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Gene name and ensembl ids
... Why a does a single gene name say MAPK3 have multiple ensembl ids and multiple fasta sequence? Isn't there supposed to be a single fasta sequence for each gene name? ...
gene sequence written 2.0 years ago by kingkenshin19970
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(Closed) Fasta Sequence from Gene name
... I have around 10000 gene names(MAPK3 , MAPK6 etc) .How can i get the fasta sequence for each gene name from ncbi all together? ...
gene sequence written 2.0 years ago by kingkenshin19970
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Loading from pdb files using Pymol
... " pymol.cmd.load('ftp://ftp.wwpdb.org/pub/pdb/data/structures/all/pdb/pdb'+pdbId+'.ent.gz') " Every time i use the above command in succession ,the following pdb file gets loaded into the same state.. I want to know how can I clear the old state and work on it instead of creating a new state.? ...
gene code written 2.2 years ago by kingkenshin19970
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Spherical coordinates of 3D structure of gene
... Does anyone have any code to get the spherical coordinates of the 3D structure of gene(3D structure is in .pdb format)? ...
gene written 2.2 years ago by kingkenshin19970 • updated 2.2 years ago by Alex Reynolds31k
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Equirectangular projection of 3D structure of gene
... Does anyone have any code to basically get the equirectangular projection of the 3 D structure of gene(3D structures are in .pdb file format)? ...
gene written 2.2 years ago by kingkenshin19970 • updated 2.2 years ago by Alex Reynolds31k
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PDB ids and Ensembl ID for gene sequence
... Do the genes with same Ensembl id but different PDB ids have same gene sequence or different gene sequence? ...
gene pdb ensembl written 2.4 years ago by kingkenshin19970 • updated 2.3 years ago by Emily_Ensembl21k
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PDB ID To Ensemble ID
... How do i map a set of PDB ID's to ENSEMBLE ID's? This has to be done in bulk ...
gene written 2.4 years ago by kingkenshin19970 • updated 2.4 years ago by GenoMax96k
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Comment: C: 3D to voxel
... I am actually trying to implement a 3D convolutional model on the 3D structure of the gene . But since the data i have, is in pdb format i dont know how to get the voxel matrix from that data. ...
written 2.4 years ago by kingkenshin19970

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