User: luzglongoria

gravatar for luzglongoria
luzglongoria20
Reputation:
20
Status:
New User
Location:
Last seen:
3 hours ago
Joined:
1 year, 2 months ago
Email:
l***********@gmail.com

Posts by luzglongoria

<prev • 66 results • page 2 of 7 • next >
0
votes
0
answers
1.2k
views
0
answers
Comment: C: Error when running pheatmap
... Thank you Kevin. I have tried to do what you have said: tbl_ready <- as.matrix(data[,2:11]) mode(tbl_ready)<-"numeric" I have checked: sum(is.infinite(tbl_ready)) [1] 0 And then I try to do the heatmap by: pheatmap(tbl_ready) And now R doesn't do anything. No error ...
written 7 months ago by luzglongoria20
0
votes
0
answers
1.2k
views
0
answers
Comment: A: Error when running pheatmap
... I have also imported the data by using a .txt file by: data <- read.table("Genes_with_function.txt", header = TRUE, sep = "\t", dec = ".") and then if I do: head(data) ID s21 s22 s23 s24 s25 s31 s32 ...
written 7 months ago by luzglongoria20
0
votes
0
answers
1.2k
views
0
answers
Comment: C: Error when running pheatmap
... It appears like this when I do head() but the dataset appears like this in R: https://ibb.co/w01P34W ...
written 7 months ago by luzglongoria20
2
votes
0
answers
1.2k
views
0
answers
Error when running pheatmap
... Hi there, I would like to do a heat map by using pheatmap. The problem is that when I tried to run it (with a very basic command) I get this error message: head(dataset) # A tibble: 6 x 11 ID s21 s22 s23 s24 s25 s31 s32 s33 s3 ...
pheatmap error in hclust written 7 months ago by luzglongoria20
0
votes
0
answers
253
views
0
answers
Comment: C: statistical analyses for tanscriptomes
... Sorry, I didn't say. It is RNA-seq ...
written 8 months ago by luzglongoria20
3
votes
0
answers
253
views
0
answers
statistical analyses for transcriptomes
... hi there, I need to do some statistical analyses of my transcriptomes. I have a database with 4 columns (gene ID (categoric), expression level (numeric), individual, species). I have 2 different species and 5 ind per species. Per each individual I have more than 20000 genes (some of them are more ...
statistical analyses R rna-seq written 8 months ago by luzglongoria20 • updated 8 months ago by ATpoint26k
0
votes
1
answer
3.7k
views
1
answers
Answer: A: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
... Solved! It was a problem with the title of the first column :) ...
written 8 months ago by luzglongoria20
0
votes
1
answer
3.7k
views
1
answer
Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
... Hi, I am trying to create a heatmap. Before I need to transform my dataset: data <- heatmap_data rnames <- data[,1] # assign labels in column 1 to "rnames" mat_data <- data.matrix(data[,2:ncol(data)]) # transform columns (I have) into a matrix ...
R error heatmap written 8 months ago by luzglongoria20
5
votes
1
answer
484
views
1
answer
heatmap with ggplot: problem when indicating min and max value
... Hi, I am trying to create a heatmap by using ggplot but when I try to indicate the min and max values of my data, R automatically modifes the values. I show you what I have done: My data: ![original data][1] Showing 1 to 14 of 22 entries library(ggplot2) library(reshape2) ## transf ...
ggplot scale_fill_gradient heatmap written 8 months ago by luzglongoria20 • updated 8 months ago by Friederike5.2k
0
votes
1
answer
410
views
1
answers
Comment: A: How to run Trinotate
... Thank you so much h.mon for your answer. However, I get an error message when I try to run the command for Trinotate. I have create a conf.txt file that looks like: # progs TRANSDECODER_DIR=/home/luz_garcia_longoria/miniconda3/pkgs/transdecoder-5.5.0-0 BLASTX_PROG=/home/luz_garcia_lo ...
written 8 months ago by luzglongoria20

Latest awards to luzglongoria

Popular Question 27 days ago, created a question with more than 1,000 views. For Encountered internal Bowtie 2 exception (#1) bowtie2-align exited with value 1
Popular Question 4 months ago, created a question with more than 1,000 views. For How to combine two .sam files?
Popular Question 4 months ago, created a question with more than 1,000 views. For Encountered internal Bowtie 2 exception (#1) bowtie2-align exited with value 1
Popular Question 6 months ago, created a question with more than 1,000 views. For How to combine two .sam files?
Supporter 7 months ago, voted at least 25 times.
Popular Question 9 months ago, created a question with more than 1,000 views. For How to combine two .sam files?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1766 users visited in the last hour