User: twesigomwedavid

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Posts by twesigomwedavid

<prev • 15 results • page 1 of 2 • next >
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vg sv calling
... Hello, Does vg have a way of handling imprecise SV breakpoints? I have been trying to genotype a deletion test case but the breakpoints differ in different samples (e.g. in homozygotes vs heterozygotes). Thanks ...
vg written 2 days ago by twesigomwedavid0 • updated 9 hours ago by glenn.hickey90
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vg docker image
... Hello, I am struggling to find a stable docker image for vg. May you help point me to the latest stable docker image of vg. Thanks ...
vg written 6 days ago by twesigomwedavid0 • updated 9 hours ago by glenn.hickey90
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Comment: C: How to determine haplotypes from variation graphs
... Alright thanks Glenn. ...
written 8 weeks ago by twesigomwedavid0
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Comment: C: CYP2D6 Variant Calling
... Thank you fin swimmer ...
written 3 months ago by twesigomwedavid0
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Comment: C: splitting multifasta-file in python
... Okay, thank you Bastien ...
written 3 months ago by twesigomwedavid0
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How to determine haplotypes from variation graphs
... vg works quite well for calling variants. Is it possible to determine haplotypes from a variation graph using vg? Thanks. ...
vg written 3 months ago by twesigomwedavid0 • updated 12 weeks ago by glenn.hickey90
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How to add queries in UpsetR plot with expression input.
... I am using an expression input to make an UpsetR plot for variant call-sets (Input: A=120, B=120, C=80, A&B=48, A&C=20, B&C=11, A&B&C=24). I have the counts of the number of true positives for each intersection. How can I add this information as a query? Most of the examples avai ...
R written 5 months ago by twesigomwedavid0
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CYP2D6 Variant Calling
... Hello, I would like to do variant calling on CYP2D6 using 1000 genomes data. What are the pros and cons of using GATK HaplotypeCaller on the CYP2D6 region? Thank you. ...
variant calling written 13 months ago by twesigomwedavid0
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splitting multifasta-file in python
... Hello, How can I split a multi-fasta file into individual sequence files in python? ...
multi-fasta file python splitting written 18 months ago by twesigomwedavid0 • updated 18 months ago by Siya Diya10
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(Closed) Runnung fastqc on Galaxy
... Has anyone tried running fastqc on Galaxy in the past two days? Seems it's not working on mine. ...
software error written 18 months ago by twesigomwedavid0

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Popular Question 5 months ago, created a question with more than 1,000 views. For splitting multifasta-file in python

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