User: Akshay Zawar

gravatar for Akshay Zawar
Akshay Zawar10
Reputation:
10
Status:
New User
Location:
Pune, India
Website:
http://www.genespectru...
Twitter:
amzawar
Last seen:
1 month, 1 week ago
Joined:
2 years, 2 months ago
Email:
a**********@gmail.com

I am a Bioinformatician with a goal to Simplify Bioinformatics !!

Founder of GeneSpectrum Life Sciences - a Bioinformatics consultancy company. 

Interested in applications of next-gen technologies such as AI-ML, Cloud Computing, etc. for Bioinformatics Analysis.

Posts by Akshay Zawar

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Help needed with LOHHLA pipeline
... Hi MaxXinE, the LOHHLA script by default uses hg19 coordinates for HLA region. My data was generated on hg38. I updated the HLA coordinates in the script and that resolved the issue. What is the genome build of your data? ...
written 6 weeks ago by Akshay Zawar10
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Comment: C: Help needed with LOHHLA pipeline
... Hi Vijay, How are you? Yes, I found the solution. It was the genome build causing this issue. ...
written 7 weeks ago by Akshay Zawar10
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Answer: A: whole genome sequencing data bank
... You will find more information related to this - https://www.biostars.org/p/140580/ ...
written 7 weeks ago by Akshay Zawar10
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Comment: C: Help needed with LOHHLA pipeline
... I have already contacted them but I haven't received any reply. I hope to get it on Monday. Let's See... ...
written 10 weeks ago by Akshay Zawar10
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Help needed with LOHHLA pipeline
... Hi, I am running [LOHHLA pipeline][1] on some cancer samples. I have successfully set up the pipeline at my end with all the dependencies installed. I was also able to run the pipeline using the example dataset. Now for my data, I have prepared all the required files. But after running the pipeli ...
lohhla ngs hla loh written 10 weeks ago by Akshay Zawar10
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Comment: C: VCF evaluation using RTG.jar vcfeval
... You might get answer to your problem in this thread: https://www.biostars.org/p/290625/ ...
written 3 months ago by Akshay Zawar10
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Comment: C: VCF evaluation using RTG.jar vcfeval
... Hi Sara, I am also benchmarking my pipeline using the same dataset as you have used. My question to you is, why you have selected *project.NIST.hc.snps.indels.vcf* as gold standard (Truth VCF) VCF and not HG001_*.vcf.gz (located at ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/NA12 ...
written 3 months ago by Akshay Zawar10
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Answer: A: SARS Cov2 NGS data analysis pipeline
... Hi, You can refer to this link: https://github.com/CDCgov/SARS-CoV-2_Sequencing#sequencing This GitHub page from the CDC provide in-depth information on NGS practices and Bioinformatics approaches to sequence Sars-Cov-2. ...
written 3 months ago by Akshay Zawar10

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