User: a4appy23

gravatar for a4appy23
a4appy2310
Reputation:
10
Status:
New User
Location:
Last seen:
2 months ago
Joined:
2 years, 4 months ago
Email:
a*******@gmail.com

Posts by a4appy23

<prev • 30 results • page 1 of 3 • next >
0
votes
0
answers
138
views
0
answers
what is the effective population size in a plot from psmc software?
... I'm using psmc software to create demographic history from a single genome. after running psmc i got a plot with effective population size on y axis and time in years in x axis... I'm wondering what the effective population size here is. is it the total number of common ancestors found in the genome ...
gene psmc demography genome bioinformatics written 9 weeks ago by a4appy2310
0
votes
0
answers
197
views
0
answers
Comment: C: denovo assembly using soap denovo
... Im trying to reconstruct a contig level assembly using genome A reads. i tried with k31 and k51 and chose k51 because it gave higher contigs compared to k31. but in this scenario 2641 is very low ...
written 3 months ago by a4appy2310
0
votes
0
answers
197
views
0
answers
denovo assembly using soap denovo
... This is a basic question. I have a genome A . when I ran quast the on the genome A that is downloaded from NCBI it had N50 of 20,634,945. when i used soap denovo 2 to reconstruct the genome A with aired end reads of genome A .The contig level assembly had N50 2669 and the scaffolds had a N50 of 25 ...
gene assembly next-gen denovo written 3 months ago by a4appy2310
0
votes
1
answer
282
views
1
answer
Regarding parameters in angsd -baq:1 and :baq:2
... Im trying to find heterozygosity using angsd software. So while dealing with the parameter , baq: (base alignment quality) to correct the misalignments i was wondering what is the difference between setting baq: 1(normal baq) and baq:2 (extended baq)? ...
gene assembly angsd snp rna-seq written 8 months ago by a4appy2310 • updated 12 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
169
views
1
answers
Comment: C: Understanding the results from converting fasta files to fastq files using refor
... yes . but i edited it now. ...
written 9 months ago by a4appy2310
3
votes
1
answer
169
views
1
answer
Understanding the results from converting fasta files to fastq files using reformat.sh from bbsuite
... Hi , I tried to edit fastA file to fastq file using the command from this https://www.biostars.org/p/275542/#275578. im trying to interpret the results now. used a fake qscore of 35. The seequences in the fasta file had A,C,G,T,N... For example if the fasta file is in the format >N33.01 ...
genome gene sequence sequencing written 9 months ago by a4appy2310
5
votes
2
answers
261
views
2
answers
generating a phylogeny tree
... Hi, I have whole genome data of few species of whales.i need to create a phylogeny tree any suggestion on how should i proceed? ...
genome gene alignment sequence R written 10 months ago by a4appy2310 • updated 10 months ago by Mensur Dlakic8.4k
4
votes
1
answer
321
views
1
answer
Interpreting a p-value from a fisher exact test?
... I did an fisher exact test to investigate if DE genes are significantly overrepresented in terms of diabetes genes. I got an p value of 0.83. other than accepting and rejecting the null hypothesis based on cut off value 0.05 how do i interpret it?. i mean what does the p-value of 0.83 mean here ...
genome gene rna-seq R written 13 months ago by a4appy2310 • updated 13 months ago by zx87549.9k
4
votes
2
answers
1.1k
views
2
answers
Definition of an isoform switching?
... im from non genetics background who started taking a course in genetics.So i was wondering what is an gene isoform switching? what happens when there is an isoform switching .can some one explain it in layman terms. ...
gene genome rna-seq sequencing written 13 months ago by a4appy2310 • updated 13 months ago by b.bearmi10
2
votes
1
answer
288
views
1
answer
understanding the data from the ucsc table browser
... im trying to find the intron length distribution of the hg18 assembly downloaded from the table browser.the refseq file has the following columns in iti calculated gene length by txstart-txend and made a plot of the distribution..however i need to find the intron length . "bin" "name" ...
gene genome introns genome browser R written 17 months ago by a4appy2310

Latest awards to a4appy23

Great Question 10 months ago, created a question with more than 5,000 views. For what does a log 2-fold change values of mean ?
Popular Question 13 months ago, created a question with more than 1,000 views. For reading multiple files in python
Popular Question 2.0 years ago, created a question with more than 1,000 views. For what does a log 2-fold change values of mean ?
Popular Question 2.0 years ago, created a question with more than 1,000 views. For BLAST parameters and explanation

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2219 users visited in the last hour
_