User: rasmus.agren

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Posts by rasmus.agren

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Robust RNA-seq normalization
... I have an experiment with significant technical issues. There are large differences in RIN values, as well as in QC metrics from the sequencing. Coverage is bad and varying, with samples ranging from 2 - 6 M uniquely mapping reads (human samples). Unfortunately the samples are few and expensive, and ...
rna-seq written 9 months ago by rasmus.agren0 • updated 9 months ago by kristoffer.vittingseerup3.0k
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Fit GLM using part of the data
... I have a single-cell RNA-seq experiment with five different treatments. The treatments are likely to result in different cell types, although this isn't known at this stage of the analysis. Regardless, they can be assumed to be quite different. Due to technical problems the size factors are also ver ...
scrna-seq glm edger written 16 months ago by rasmus.agren0 • updated 16 months ago by Kevin Blighe53k

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