User: Stef

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Stef0
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Posts by Stef

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Creating a 5-way Venn diagram
... IT WORKED!!!! Thank you :) ...
written 10 months ago by Stef0
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Comment: C: Creating a 5-way Venn diagram
... Sorry. 1. They are the same thing. I just edited it. 2. The output is "NULL". What does that mean? ...
written 10 months ago by Stef0
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Creating a 5-way Venn diagram
... Hello, I want to create a Venn diagram. I am trying to use the overLapper function. I created six CSV files with DEGs for six tissues (pollen, 1 week old bagged flowers, 1 week old unbagged flowers, recently open flowers, one month old seed capsule, three month old seed capsule). I made lists of ...
R rna-seq written 10 months ago by Stef0
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Comment: C: Proper design for DESeq2 and other RNAseq general questions
... Ok. I will stick to DESeq2 then because I am not sure if ballgown does RPKM. I think they only normalize with FPKM or gene coverage. ...
written 2.2 years ago by Stef0
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Comment: C: Proper design for DESeq2 and other RNAseq general questions
... So they come from the same trees (tree one, tree two, and tree three). I apologize about not being clear: id tree tissue age type group eg1MT1 one early_capsule early flowering one.early_capsule eg1MT2 two early_capsule early flowering two.early_capsule eg1MT3 three early_capsule early flowerin ...
written 2.2 years ago by Stef0
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Proper design for DESeq2 and other RNAseq general questions
... Hello, I am new to the RNAseq. I sequenced 20 libraries from Eucalyptus. They are all different tissues: early flower, late flower pollinated, late flower unpollinated, early seed capsule, late seed capsule, mature pollen, and mature leaf. I have three biological replicates for all the tissues ex ...
stringtie deseq2 rna-seq hisat2 written 2.2 years ago by Stef0 • updated 2.2 years ago by swbarnes29.2k

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