User: Stef

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Stef0
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Posts by Stef

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Comment: C: Proper design for DESeq2 and other RNAseq general questions
... Ok. I will stick to DESeq2 then because I am not sure if ballgown does RPKM. I think they only normalize with FPKM or gene coverage. ...
written 11 months ago by Stef0
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Comment: C: Proper design for DESeq2 and other RNAseq general questions
... So they come from the same trees (tree one, tree two, and tree three). I apologize about not being clear: id tree tissue age type group eg1MT1 one early_capsule early flowering one.early_capsule eg1MT2 two early_capsule early flowering two.early_capsule eg1MT3 three early_capsule early flowerin ...
written 11 months ago by Stef0
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Proper design for DESeq2 and other RNAseq general questions
... Hello, I am new to the RNAseq. I sequenced 20 libraries from Eucalyptus. They are all different tissues: early flower, late flower pollinated, late flower unpollinated, early seed capsule, late seed capsule, mature pollen, and mature leaf. I have three biological replicates for all the tissues ex ...
stringtie deseq2 rna-seq hisat2 written 11 months ago by Stef0 • updated 11 months ago by swbarnes26.1k

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