User: figo

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figo200
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Posts by figo

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Finding Adapters For Illumina Reads
... Hi All I have some illumina reads but I don't know which adapters has been used. How I can find if my illumina reads has adapters and of which type. Best ...
fastqc written 7.0 years ago by figo200 • updated 6.3 years ago by Irsan7.2k
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Comment: C: Perl Script To Summarise The Repeat Masker Out File
... thanks for your time and fantastic reply. Just one addition that in this part of script "awk '{print $7-$6,$11"-"$10}' " the repeat element length will be ($7-$6)+1 since the values are the repeat start and repeat end so simple subtraction will cause the decrease of length by 1. So, addition of 1 ...
written 7.0 years ago by figo200
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Comment: C: Perl Script To Summarise The Repeat Masker Out File
... thanks for your reply. Repeat masker was run by some one else and I got only the repeat masked outfile. I want to summarise the entire outfile . I don't have the repeat masked summary file.I know how much (bp) was used for the analysis. I want the different percentage of all the different types of e ...
written 7.0 years ago by figo200
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Perl Script To Summarise The Repeat Masker Out File
... Hi All I need to summarize a repeat masker.out file with different repeats types with percentage. Does any body no any tool which can do this or a perl script. Best ...
written 7.0 years ago by figo200 • updated 5.6 years ago by Biostar ♦♦ 20
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Comment: C: Find The Second Best Maximum Likelihood Tree
... Thanks but I think PAUP is paid. Do you know any free program which does this? ...
written 7.1 years ago by figo200
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Find The Second Best Maximum Likelihood Tree
... Hi All Generally the phylogentic program gives the best Maximum likelihood tree. Do any one know any program/software which, say gives the top10 best maxim likelihood scores and trees or at least second best maximum likelihood score and tree. Best ...
written 7.1 years ago by figo200 • updated 6.9 years ago by Biostar ♦♦ 20
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Designing Primers For Microsatellites In Long Scaffolds
... Hi All I have very long scaffolds in megabases, I figured out all the microsatellites in it. Now I want to design primers for those microsatellites but as my sequences are very long it is taking too much of time to run the primer3. Any one knows a better way to design primers in scaffolds as my sca ...
written 7.2 years ago by figo200 • updated 3.7 years ago by Felix Francis510
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Comment: C: How To Obtain The Nucleotide Sequences Instead Of Amino Acid From The Getorf Out
... thanks ... I think didn't see the options correctly . ...
written 7.3 years ago by figo200
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How To Obtain The Nucleotide Sequences Instead Of Amino Acid From The Getorf Output Of Emboss
... Hi All I was running the getorf on nucleotide sequences to find the ORF. In the output I get the amino acid sequences of the ORF. Can any one tell me how I can fetch the nucleotide sequences instead of amino acid for ORF as output. Best regards ...
written 7.3 years ago by figo200 • updated 7.3 years ago by Damian Kao15k
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Ambiguity In Repeat Masked File In Ucsc
... Hi All I extracted the sequences from chromosome for a repeat element from UCSC which is around 6000 in length which is LINE/L1. Now when I put this sequences in the repeat masker web version to just check it what I find that this sequence has now 3 LINE/L1 which are different types of LINE/L1. So ...
ucsc written 7.3 years ago by figo200 • updated 7.3 years ago by KCC4.0k

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Popular Question 8.1 years ago, created a question with more than 1,000 views. For Translation Of Nucleotide To Amino Acid

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