User: sahar850

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sahar8500
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Posts by sahar850

<prev • 5 results • page 1 of 1 • next >
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TCGA retrieving file id from submitter_aliquot_ids using the files endpoint
... Hi, i got a list of submitter_aliquot_ids and i am trying to retrieve there file id. so far i manege to get some result using R code with cURL in the cases endpoint. the data i get is too maccey to use. does anyone know how to get this information with the **files** endpoint? the code i am using ...
R tcga written 10 weeks ago by sahar8500
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Comment: C: Converting Ensembl gene id/gene id version to hgnc symbol using Biomart r packag
... my R version is 3.5.0 ...
written 5 months ago by sahar8500
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Comment: C: Converting Ensembl gene id/gene id version to hgnc symbol using Biomart r packag
... It was the first thin i did, i get the same error message listed above... ...
written 5 months ago by sahar8500
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Comment: C: converting ensemble gene id/gene id version to hgnc symbol using Biomat r packeg
... Tnx for the tip, i will add the parameters names (it's actually the first time i'm using R) To the current subject, the sub works fain, i just tried running the code on parts of the data and the error is given in the 532 element which is: ENSG00000036549.11 and ENSG00000036549 after the sub, really ...
written 5 months ago by sahar8500
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Converting Ensembl gene id/gene id version to hgnc symbol using Biomart r package
... Hi, I need to convert data from TCGA in the form of ensembl gene id version to hgnc symbol using Biomat r package. After creating a data frame containing all the ensembl gene id,I tried this loop code: for (i in 1:length(data[,1])) { data[i,1] <- getBM(attributes=c('hgnc_symbol ...
R tcga gene id ensembl written 5 months ago by sahar8500 • updated 5 months ago by RamRS20k

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