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Answer: Answer: Gene prediction in the era of long read sequencing data and many reference genom
10 months ago by William ★ 5.3k
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1.7k
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Answer: Answer: Is it possible to construct a full genome from whole sequence VCF files containi
2.6 years ago by William ★ 5.3k
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1.4k
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Answer: Answer: Strange speed up in GATK LeftAlignIndels
2.6 years ago by William ★ 5.3k
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4.2k
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Answer: Answer: How to merge many huge gVCFs with high speed.
2.6 years ago by William ★ 5.3k
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3.5k
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Answer: Answer: How to set variant FILTER in a VCF file based on overlap with regions in a BED
3.0 years ago by William ★ 5.3k
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1.2k
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Answer: Answer: Convert GFF3 to splice junction BED file, for filtering variants multi-sample (
3.0 years ago by William ★ 5.3k
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2.0k
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Answer: A: How to "discover" read structure and barcodes given Illumina sequencing run dire
3.3 years ago by William ★ 5.3k
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10k
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Answer: A: Counting base and nucleotide frequency of multifasta file
3.4 years ago by William ★ 5.3k
2
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1.1k
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Answer: A: Plotting marker location co-linearity between multiple physical and genetic maps
3.9 years ago by William ★ 5.3k
16
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3
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34k
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Answer: A: Multi-Sample Vcf To Phylogenetic Tree.
updated 4.4 years ago by 43k • written 10.5 years ago by ★ 5.3k
4
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Answer: A: Do freeBayes and platypus support gVCF (ie incremental variant calling for large
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 5.3k
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Answer: A: Ideal practice to manage huge NGS dataset/Intermediate files of Whole Genome Hum
updated 4.4 years ago by 43k • written 8.6 years ago by ★ 5.3k
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2
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20k
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Answer: A: Why is Hadoop not used a lot in bio-informatics?
updated 4.5 years ago by 43k • written 9.5 years ago by ★ 5.3k
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Answer: A: Breakdancer Compile Error: Regionlimitedbamreader.Hpp:23:5: Error: ‘Bam_Iter_T’
updated 4.5 years ago by 43k • written 10.7 years ago by ★ 5.3k
7
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1
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39k
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Answer: A: Combining Data Of Multiple Vcfs Into One.
updated 5.3 years ago by 11k • written 10.9 years ago by ★ 5.3k
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4.2k
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Answer: A: find homozygous SNPs between two samples's VCF files.
6.1 years ago by William ★ 5.3k
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6.9k
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Answer: A: How to determine percentage missing genotypes in VCF/BCF?
6.8 years ago by William ★ 5.3k
4
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9.9k
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Answer: A: GBS and RADseq
7.0 years ago by William ★ 5.3k
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6.4k
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Answer: A: Does allele refer to the entire gene sequence or one position of the gene sequen
7.0 years ago by William ★ 5.3k
16
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2
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44k
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Answer: A: How to filter vcf file on minimum genotype depth and quality for each sample
7.1 years ago by William ★ 5.3k
4
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1
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20k
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Answer: A: Update 'ID' column in VCF file using BCFtools annotate
7.4 years ago by William ★ 5.3k
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2.0k
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Answer: A: Vcf strange representation of alt and ref
7.7 years ago by William ★ 5.3k
2
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5.1k
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Answer: A: how to analyze plot-vcfstats
7.8 years ago by William ★ 5.3k
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2.9k
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Answer: A: Insillico dual restriction enzyme reference genome digestion.
7.8 years ago by William ★ 5.3k
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2.1k
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Answer: A: Produce raw SNP calls
7.8 years ago by William ★ 5.3k
3
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44k
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Answer: A: How to filter vcf file on minimum genotype depth and quality for each sample
7.8 years ago by William ★ 5.3k
3
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1
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7.0k
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Answer: A: Remove variants that are homozygous-reference (0/0) in two VCF files
7.8 years ago by William ★ 5.3k
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1
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1.9k
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Answer: A: Functional Programming Examples for Students
7.8 years ago by William ★ 5.3k
3
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1
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10.0k
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Answer: A: Add contig lenght to VCF header in a robust way
7.8 years ago by William ★ 5.3k
3
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2
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3.7k
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Answer: A: Is there any other way to separate CNVs from SNVs and MNVs from vcf file of Ion
7.8 years ago by William ★ 5.3k
1
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0
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2.1k
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Answer: A: How can I illustrate the importance of open source software in bioinformatics fo
7.9 years ago by William ★ 5.3k
2
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1
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4.7k
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Answer: A: bcftools filter applied to specific sample column
8.0 years ago by William ★ 5.3k
1
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0
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7.5k
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Answer: A: Amzon EC2 for bioinformatics, genomics, NGS analysis
8.1 years ago by William ★ 5.3k
0
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1
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3.3k
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Answer: Answer: High School Researcher: Is it possible to gain access to publicly available whol
updated 19 months ago by 43k • written 8.6 years ago by ★ 5.3k
3
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0
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24k
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Answer: Answer: Variant call format (VCF) file, how to get statistics per sample?
updated 18 months ago by 43k • written 8.7 years ago by ★ 5.3k
0
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1
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4.6k
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Answer: Answer: Google genomics cloud platform ?
updated 16 months ago by 43k • written 8.8 years ago by ★ 5.3k
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1
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2.7k
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Answer: A: Recent Review / Best practices for (meta) micro array expression data analysis
9.1 years ago by William ★ 5.3k
2
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0
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3.8k
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Answer: Answer: Official specs and API's for proteomics data (like Adam, VCF, HTS-JDK) (both fil
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 5.3k
0
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1
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1.4k
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Answer: Answer: Alleles tested by probes 23me chip
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 5.3k
0
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1
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5.1k
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Answer: Answer: GATK: How to filter variant sites of sample VCF that are not present in a set of
updated 2.5 years ago by 43k • written 9.7 years ago by ★ 5.3k
3
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0
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2.6k
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Answer: Answer: Looking for a PhD research topic
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 5.3k
2
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0
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2.8k
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Answer: Answer: How can I confirm structural variation is correct?
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 5.3k
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7.7k
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Answer: Answer: Comparing VCF Files
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 5.3k
0
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1
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2.8k
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Answer: A: Concordance Between Illumina 50 Snp Chip And Illumina Paired-End Ngs Snps
10.1 years ago by William ★ 5.3k
8
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1
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12k
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Answer: A: Are There Internships In Bioinformatics? How Can A Foreign Student Get Started I
10.2 years ago by William ★ 5.3k
0
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0
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3.3k
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Answer: A: Are We At A Point Yet Where We Can Do Bioinformatics Research Based On Public Da
10.5 years ago by William ★ 5.3k
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2
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8.7k
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Answer: A: Convert Solid Xsq To Fastq Without Intermediates Files
10.5 years ago by William ★ 5.3k
1
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0
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7.4k
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Answer: A: Reliable Tools To Filter Vcf Format Files
10.6 years ago by William ★ 5.3k
1
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2
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7.2k
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Answer: A: Filtering Gatk Indel Output Length 20+
10.6 years ago by William ★ 5.3k
0
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1
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4.5k
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Answer: A: Breakdancer Bam2Cfg.Pl , Coefficient Of Variation Is Too Large, Not Excluding Ou
10.6 years ago by William ★ 5.3k
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