User: harrypotterandsbt

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Posts by harrypotterandsbt

<prev • 26 results • page 2 of 3 • next >
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Is there any other tool to analysis Target gene based on Chip-seq and RNA-seq joint analysis result
... I know there is a tool called BETA can analysis and predict target gene based on RNA-seq and ChIP-seq datasets. And I wonder there are any other tools can do similar work.I google it and I find there are little new tools to do th work. I don't know why ? Any ideals ? Welcome your valueable points! ...
joint-analysis chip-seq rna-seq written 9 months ago by harrypotterandsbt70
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Comment: C: How to build a bioinformatics server
... one half year means half a year , right? ...
written 10 months ago by harrypotterandsbt70
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Answer: A: Snakemake report error:Missing input files for rulle all
... I know the solution, add `,` at the tail of `05_ft/{nico}_gene.gtf` ...
written 11 months ago by harrypotterandsbt70
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Snakemake report error:Missing input files for rulle all
... I'm writing my RNA-seq pipeline by Snakemake.when I was writing the last part"rule fpkm" which is calculate fpkm value from bam files. I got the error: MissingInputException in line 3 of /root/s/r/snakemake/my_rnaseq_data/Snakefile: Missing input files for rule all: 05_ft/wt2_transcript ...
pipeline snakemake rna-seq written 11 months ago by harrypotterandsbt70
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Answer: A: Convert Gene IDs of Tomato Sol Database
... Hello everyone,I think find an alternate. I suggest everyone use SL3.0 and corresponding gtf file to run RNA-seq workflow then we will get the result that most genes are labeled by LOCXXXXXXX。then we can use clusterProfiler(R package) : downloading tomato orgdb from AnnotationHub(),using bitr funct ...
written 12 months ago by harrypotterandsbt70
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Comment: C: Convert Gene IDs of Tomato Sol Database
... It can't work when I input a list of SolycXXgXXXXXX , and I cannot find the Download page ...
written 12 months ago by harrypotterandsbt70
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Comment: C: Convert Gene IDs of Tomato Sol Database
... Hi. Kevluv93, Would you still be able to share the file? My email is 21707001sbt@zju.edu.cn. Thank you ...
written 12 months ago by harrypotterandsbt70
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How to select high quality RNA-seq datasets from SRA database?
... Hi everyone. I have a question about how to find useful datasets from SRA database. I want to built a plant database from RNAs-seq data. But I don't know how to select the datasets which can meet my demand.Because I can find some RNA-seq dataset that every SRA run data has same or less base number ...
sra rna-seq written 13 months ago by harrypotterandsbt70
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Comment: C: Arabidopsis Araport11 genome annotation file
... Thank you for suggestion! I have accpted the helpful answer. Sorry,I'm new here and I will remeber your suggestion! ...
written 14 months ago by harrypotterandsbt70
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Comment: A: Arabidopsis Araport11 genome annotation file
... Thank you! Lieven.sterck.You answers really helps! ...
written 14 months ago by harrypotterandsbt70

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Popular Question 11 weeks ago, created a question with more than 1,000 views. For Snakemake report error:Missing input files for rulle all

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