User: Tky

gravatar for Tky
Tky990
Reputation:
990
Status:
Trusted
Location:
Japan
Website:
http://www.psytky03.com/
Last seen:
7 months, 1 week ago
Joined:
7 years, 5 months ago
Email:
l************@gmail.com

about me

Posts by Tky

<prev • 70 results • page 1 of 7 • next >
0
votes
1
answer
1.1k
views
1
answers
Comment: C: Reverse translate and get the genomic position
... I think you can user Json parser for R. I am mainly using Perl ;-) ...
written 3.9 years ago by Tky990
1
vote
1
answer
1.1k
views
1
answers
Answer: A: Reverse translate and get the genomic position
... There is the Ensembl API can convert the CDS coordinates to genomic coordinates. You can also do for cDNA with a similar API. Before you start, you need to get the transcript ID first for your gene (in your case, FLT3). Suppose we use the isoform 1 of FLT3, the transcript ID will be ENST00000241453 ...
written 3.9 years ago by Tky990
1
vote
2
answers
2.5k
views
2
answers
Comment: C: How To Visualize The Corresponding Dna Sequence For A Given Postion Amino Acid
... Hi, thanks for the information and the screen video!! The software is so fancy and the function to show amino acid property is very intuitive and informative. Will recommend to my colleagues as well! ...
written 4.0 years ago by Tky990
0
votes
2
answers
1.6k
views
2
answers
Comment: C: Mac operating system for bioinformatics
... It looks great! is this a virtual machine or you installed linux on a Mac? ...
written 4.0 years ago by Tky990
3
votes
1
answer
1.2k
views
1
answers
Answer: A: Differential expression method for N=1 (Treatment) vs multiple control samples
... As Devon said, you can not expect reliable results, but if you do want to try, check GFold,  http://bioinformatics.oxfordjournals.org/content/28/21/2782.long ...
written 4.0 years ago by Tky990
0
votes
2
answers
1.7k
views
2
answers
Comment: C: primer design using BLASTn
... I don't know whether you can do this with BlastN or not. The minimum length of seed word to initialize the alignment is 7 nt, which likely affects the search results.  ...
written 4.0 years ago by Tky990
1
vote
2
answers
1.7k
views
2
answers
Answer: A: primer design using BLASTn
... For Primer-Blast, I think you can tweak the "Primer Pair Specificity Checking Parameters".  To test whether your primer is truly unique, you may try GGGenome (https://gggenome.dbcls.jp/) to search targets that are similar to your input sequences. A search using your first sequence yield 29 possible ...
written 4.0 years ago by Tky990
8
votes
0
answers
1.0k
views
6 follow
0
answers
Tool: Free Picture/Illustration Material for Academic/Research
...   The Togo Picture Gallery is provided by DBCLS (Database for Life Science) in Japan. All pictures/materials are under CC 2.1 license and you can use freely in your presentation / grant application / lecture as well as manuscript. Hope you will find it useful. (the navigation bar are in Japanese b ...
photo tool written 4.0 years ago by Tky990
0
votes
0
answers
1.3k
views
0
answers
Comment: C: ggbio package only works with h19 genome
... I can not reproduce your error, it loads without problem for me. maybe you can try rm(list=ls()) first? ...
written 4.0 years ago by Tky990
1
vote
2
answers
2.7k
views
2
answers
Comment: C: Download entire SRA study to convert to Fastq
... HI, Phil, thanks for the advice! Got your point.  wget 'http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?save=efetch&rettype=runinfo&db=sra&term=PRJNA223640' -O - | grep -v '^Run' | cut -d',' -f12 | xargs -n 1 wget ...
written 4.0 years ago by Tky990

Latest awards to Tky

Great Question 11 months ago, created a question with more than 5,000 views. For How To Get The Gene Name Interactively In A R Plot
Appreciated 3.9 years ago, created a post with more than 5 votes. For A: Download entire SRA study to convert to Fastq
Great Question 3.9 years ago, created a question with more than 5,000 views. For How To Load Multiple Bed Files To Ucsc Genome Browser By Url And With Track Annotation
Good Answer 3.9 years ago, created an answer that was upvoted at least 5 times. For A: Automated Literature Search For List Of Genes
Popular Question 3.9 years ago, created a question with more than 1,000 views. For How To Get The Gene Name Interactively In A R Plot
Student 3.9 years ago, asked a question with at least 3 up-votes. For Is Transfac Professional Worth The Price?
Scholar 4.0 years ago, created an answer that has been accepted. For A: Differential expression method for N=1 (Treatment) vs multiple control samples
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: How To Search Disease Association For A List Of Genes?
Appreciated 4.0 years ago, created a post with more than 5 votes. For A: Automated Literature Search For List Of Genes
Appreciated 4.0 years ago, created a post with more than 5 votes. For A: Automated Literature Search For List Of Genes
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: How To Search Disease Association For A List Of Genes?
Appreciated 5.7 years ago, created a post with more than 5 votes. For A: Automated Literature Search For List Of Genes
Appreciated 5.7 years ago, created a post with more than 5 votes. For Is Transfac Professional Worth The Price?
Good Question 5.7 years ago, asked a question that was upvoted at least 5 times. For Is Transfac Professional Worth The Price?
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Cnv Frequency In Dgv Database
Popular Question 5.7 years ago, created a question with more than 1,000 views. For How To Get The Gene Name Interactively In A R Plot
Popular Question 5.7 years ago, created a question with more than 1,000 views. For Is Transfac Professional Worth The Price?
Popular Question 5.7 years ago, created a question with more than 1,000 views. For False Positive Peaks In Chip-Seq - How To Locate Them And How Do They Arise?
Supporter 5.7 years ago, voted at least 25 times.
Teacher 5.7 years ago, created an answer with at least 3 up-votes. For A: How To Search Disease Association For A List Of Genes?
Teacher 5.7 years ago, created an answer with at least 3 up-votes. For A: Perl Expression Of $_ ||=

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1970 users visited in the last hour