User: Mbillah

gravatar for Mbillah
Mbillah110
Reputation:
110
Status:
Trusted
Location:
Chittagong
Last seen:
10 months, 2 weeks ago
Joined:
1 year, 8 months ago
Email:
m**********@gmail.com

Posts by Mbillah

<prev • 65 results • page 1 of 7 • next >
0
votes
0
answers
260
views
0
answers
Comment: C: NGSadmix segmentation 11 error message
... The system is running out of memory. ...
written 10 months ago by Mbillah110
0
votes
0
answers
556
views
0
answers
Suggest vcf filtered parameter for gatk VariantFiltration
... Using GATK we generated a vcf file and now using the following command, we have been trying to filter those reads. However, we observed little to no change in number of variants. I am unable to understand the problem Is there any error in the script below? Could you kindly suggest any other script o ...
gatk4 snps written 12 months ago by Mbillah110 • updated 12 months ago by WouterDeCoster43k
1
vote
0
answers
236
views
0
answers
(Closed) Giving some ideas
... I have 10 samples. I want to do a better publication.What kind of analysis can I do? ...
other written 13 months ago by Mbillah110
3
votes
0
answers
267
views
0
answers
Gene Count from GFF3 file
... We used the MAKER pipeline to predict genes from our recently assembled genome. After filtering we tried to annotate our predicted genes with InterProScan. Now we want to count how many genes the InterProScan has annotated? ...
interproscan annotation written 14 months ago by Mbillah110
2
votes
1
answer
324
views
1
answer
MD5 for EBI VCF file submission
... Recently I am trying to submit vcf file to EBI(European Bioinformatics Institute) database. In EVA_Submission_template they want md5 value and md5sum value of fasta file. How can I generate md5 value? Thanks in advance ...
md5 snp written 15 months ago by Mbillah110 • updated 15 months ago by Benn8.0k
0
votes
0
answers
326
views
0
answers
Run abacas for multiple scaffold (20k +)
... I have a scaffold.fa file which contains more than 20K scaffolds. Now I want to run abacas among them. Abacas wants a single query sequence. But I have more than 20,000 sequences scaffolds. So this is not possible to do one by one. How can I do this? ...
assembly written 15 months ago by Mbillah110
3
votes
1
answer
337
views
1
answer
dbsnp for capra hircus
... Can anyone suggest me a dbsnp for Capra hircus(goat)? Recently I find out variants of a goat breed now I want to add rs id to this SNPs so I need dbsnp. ...
indels snp variants written 15 months ago by Mbillah110
2
votes
1
answer
841
views
1
answer
Duplicate variants in same position: bcftools
... I create a vcf file by bcftools mpileup command. But I got the huge number of duplicate variants. Duplicate means it shows different variants in the same position. How can I handle this situation? Example: chr1 3993567 T A chr1 3993567 tc t ...
vcf bcftools written 16 months ago by Mbillah110 • updated 16 months ago by zx87549.2k
0
votes
0
answers
329
views
0
answers
abacas assembly contig to chromosome
... I using abacas to perform contig to chromosome assembly. Abacas spread is too much slow. My contig size is 2.2 GB and all contig size is greater than 200 bp. Abacas do not support threads and multiple cores and it takes 6-7 days to perform single chromosome assembly. Is there any way to spread up th ...
assembly written 17 months ago by Mbillah110
2
votes
1
answer
300
views
1
answer
blastx to compute complete, partial or missing genes
... I have a protein sequence and a chromosome. Now I want to find out how many complete, partial or missing genes in my chromosome by the blast. So that I used blastx program, Now how can I determine complete, partial or missing genes from the blast output. ...
gene blastx blast written 17 months ago by Mbillah110 • updated 17 months ago by lieven.sterck7.8k

Latest awards to Mbillah

Rising Star 18 months ago, created 50 posts within first three months of joining.
Student 19 months ago, asked a question with at least 3 up-votes. For Implement ensembl gene annotation pipeline for my assembly
Supporter 19 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1866 users visited in the last hour