User: Mbillah

gravatar for Mbillah
Mbillah100
Reputation:
100
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Trusted
Location:
Chittagong
Last seen:
18 hours ago
Joined:
1 month, 1 week ago
Email:
m**********@gmail.com

Posts by Mbillah

<prev • 47 results • page 1 of 5 • next >
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Comment: C: How sickle (adaptive trimming tool) work.
... I also got this article, but i didn't understand exactly, what parameters should we use & how can i select those parameters? I got only two parameters that are length and quality threshold, is there any other parameters? Did you use it before? if yes, then it will be very nice if you share you ...
written 21 hours ago by Mbillah100
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How sickle (adaptive trimming tool) work.
... I am trying to understand how "sickle - A windowed adaptive trimming tool for FASTQ files using quality" work. Can any explain with a example if they have worked with this tool before? Which one is best - trimmomatic or sickle? I have paired end, illumina hiseq 2000 reads. Thank you ...
sequence written 2 days ago by Mbillah100 • updated 2 days ago by Pierre Lindenbaum114k
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Comment: C: Overlapped Variations Detecting
... Ok, thank you for your comment. ...
written 5 days ago by Mbillah100
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Overlapped Variations Detecting
... I created two vcf files using gatk and samtools. Now I want to detect overlapped variation to remove false positives. How can I detect overlapped variation? ...
snp written 5 days ago by Mbillah100 • updated 5 days ago by Emily_Ensembl16k
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Comment: C: How can implement ensembl gene annotation pipeline for my data?
... Can the maker2 give these? `Protein coding genes, ` `Small non coding genes, ` `Long non coding genes, ` `Other non coding genes, ` `Pseudogenes, ` `Gene transcripts ` ...
written 9 days ago by Mbillah100
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Comment: C: How can implement ensembl gene annotation pipeline for my data?
... Actually I don't understand how can I start, can you tell me how can I start? can you please explain this command `find . -name '*.p[l|m]' -exec perltidy -pro=perltidyrc -b {} \;` ...
written 9 days ago by Mbillah100
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Comment: C: How can implement ensembl gene annotation pipeline for my data?
... I have paired read, contigs, scaffolds , gff file and now I want to annotate the gene like Protein coding genes, Small non coding genes, Long non coding genes, Other non coding genes, Pseudogenes, Gene transcripts. ...
written 9 days ago by Mbillah100
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Comment: C: How can i increase variants accuracy?
... Ok, Thank you for your reply ...
written 9 days ago by Mbillah100
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Implement ensembl gene annotation pipeline for my assembly
... I'm new in gene annotation, can any one help me to implement ensembl gene annotation pipelines. How can I implement the ensembl gene annotation pipeline for my data? ensembl is web based? is there any linux package? can I implement it on my server or their website? can anyone give any tutorial link? ...
gene annotation ensembl written 9 days ago by Mbillah100 • updated 9 days ago by WouterDeCoster34k
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Comment: C: How can i increase variants accuracy?
... My read's depth coverage 30X, can I use this technique? ...
written 10 days ago by Mbillah100

Latest awards to Mbillah

Student 8 days ago, asked a question with at least 3 up-votes. For Implement ensembl gene annotation pipeline for my assembly
Supporter 9 days ago, voted at least 25 times.

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