User: hohoku

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hohoku0
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Posts by hohoku

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Comment: C: How do I filter a BAM file for proper pairs WITHOUT samtools
... I would normally agree, but we have reasons for not using samtools in this instance ...
written 7 days ago by hohoku0
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Answer: A: How do I filter a BAM file for proper pairs WITHOUT samtools
... Thanks for the above responses, but we also found Sambamba which is pretty fast `sambamba view -f bam -F "proper_pair" -o output.bam input.bam` ...
written 7 days ago by hohoku0
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Comment: C: How do I filter a BAM file for proper pairs WITHOUT samtools
... We have some conflicts with samtools ...
written 7 days ago by hohoku0
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How do I filter a BAM file for proper pairs WITHOUT samtools
... I need to remove unpaired reads from my BAM file... and I'm looking for a non-samtools way of doing it. Suggestions? ...
alignment written 8 days ago by hohoku0

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