User: Dylan Wang
Dylan Wang • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Harbin
- Scholar ID:
- Google Scholar Page
- Last seen:
- 2 weeks, 2 days ago
- Joined:
- 1 year, 7 months ago
- Email:
- r********@gmail.com
Posts by Dylan Wang
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... I'm curious about the difference between Alpha Complex and Rips Complex? Can anyone help me understand? ...
written 5 weeks ago by
Dylan Wang • 20
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... Hi - in the humsavar dataset there are variants given by protein position and amino acid change. ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/variants/
Is there a way to convert these to Genomic coordinates.
What is the reference genome (annotation?) version about AA s ...
written 5 months ago by
Dylan Wang • 20
• updated
4 months ago by
Elisabeth Gasteiger • 1.7k
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... Yes，I used *devtools* package to write my package. ...
written 9 months ago by
Dylan Wang • 20
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... I want to write an R package and perform some functions in *limma* package. When I used `importFrom limma lmFit`
I got the error:
> Namespace dependency not required: ‘limma’.
What's the problem? ...
written 9 months ago by
Dylan Wang • 20
• updated
9 months ago by
RamRS ♦ 27k
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... Thank you for your help! I will try to obtain DE genes using raw counts. ...
written 11 months ago by
Dylan Wang • 20
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... I downloaded the FPKM data from GEO database. They just provided the FPKM data matrix. For raw count data, they provided SRA format sequencing data. However, I am in urgent need of data analysis, so I would like to ask if there is any differentially expressed gene analysis method for FPKM. ...
written 11 months ago by
Dylan Wang • 20
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... I just have FPKM RNA-seq gene expression data, I would like to ask which software or R-package can use fpkm data to identify differentially expressed genes. ...
written 11 months ago by
Dylan Wang • 20
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... Thank you! I got it. ...
written 11 months ago by
Dylan Wang • 20
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... I have already downloaded the TCGA-BRCA clinical data. I want to divide the tumor sample using HER2 status. But I do not know which item represents the HER2 status? There are a lot of items (contain "HER2" keyword) such as:
lab_proc_her2_neu_immunohistochemistry_receptor_status
lab_procedure_her2_ ...
written 12 months ago by
Dylan Wang • 20
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... Thank you for your answer!
I downloaded some SRA data from NCBI. I read its introduction:
Data processing Basecalls performed using bcl2fastq (v2-2.19).
Reads were aligned to hg19 reference using STAR (v2.5.2).
Transcripts were quantified using RSEM (v1.2.30) and the GRCh37.68 gtf annot ...
written 17 months ago by
Dylan Wang • 20
Latest awards to Dylan Wang
Popular Question
4 weeks ago,
created a question with more than 1,000 views.
For About TCGA CNV data preprocessing
Popular Question
11 months ago,
created a question with more than 1,000 views.
For About TCGA CNV data preprocessing
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