User: Dylan Wang

gravatar for Dylan Wang
Dylan Wang20
Reputation:
20
Status:
New User
Location:
Harbin
Scholar ID:
Google Scholar Page
Last seen:
2 weeks, 2 days ago
Joined:
1 year, 7 months ago
Email:
r********@gmail.com

Posts by Dylan Wang

<prev • 17 results • page 1 of 2 • next >
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(Closed) About complex of protein structure
... I'm curious about the difference between Alpha Complex and Rips Complex? Can anyone help me understand? ...
3d complex protein written 5 weeks ago by Dylan Wang20
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What is the reference genome version of snps in humsavar variant set (2019_10)
... Hi - in the humsavar dataset there are variants given by protein position and amino acid change. ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/variants/ Is there a way to convert these to Genomic coordinates. What is the reference genome (annotation?) version about AA s ...
humsavar uniprot snp variants written 5 months ago by Dylan Wang20 • updated 4 months ago by Elisabeth Gasteiger1.7k
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Comment: C: Namespace dependency not required limma
... Yes,I used *devtools* package to write my package. ...
written 9 months ago by Dylan Wang20
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Namespace dependency not required limma
... I want to write an R package and perform some functions in *limma* package. When I used `importFrom limma lmFit` I got the error: > Namespace dependency not required: ‘limma’. What's the problem? ...
R bioconductor limma written 9 months ago by Dylan Wang20 • updated 9 months ago by RamRS27k
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Comment: C: On identifying differentially expressed genes using RNA-Seq (fpkm) data.
... Thank you for your help! I will try to obtain DE genes using raw counts. ...
written 11 months ago by Dylan Wang20
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Comment: C: On identifying differentially expressed genes using RNA-Seq (fpkm) data.
... I downloaded the FPKM data from GEO database. They just provided the FPKM data matrix. For raw count data, they provided SRA format sequencing data. However, I am in urgent need of data analysis, so I would like to ask if there is any differentially expressed gene analysis method for FPKM. ...
written 11 months ago by Dylan Wang20
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On identifying differentially expressed genes using RNA-Seq (fpkm) data.
... I just have FPKM RNA-seq gene expression data, I would like to ask which software or R-package can use fpkm data to identify differentially expressed genes. ...
gene rna-seq written 11 months ago by Dylan Wang20
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Comment: C: About TCGA breast cancer HER2 status
... Thank you! I got it. ...
written 11 months ago by Dylan Wang20
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About TCGA breast cancer HER2 status
... I have already downloaded the TCGA-BRCA clinical data. I want to divide the tumor sample using HER2 status. But I do not know which item represents the HER2 status? There are a lot of items (contain "HER2" keyword) such as: lab_proc_her2_neu_immunohistochemistry_receptor_status lab_procedure_her2_ ...
rna-seq written 12 months ago by Dylan Wang20
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Comment: C: RSEM: The reference contains no transcripts!
... Thank you for your answer! I downloaded some SRA data from NCBI. I read its introduction: Data processing Basecalls performed using bcl2fastq (v2-2.19). Reads were aligned to hg19 reference using STAR (v2.5.2). Transcripts were quantified using RSEM (v1.2.30) and the GRCh37.68 gtf annot ...
written 17 months ago by Dylan Wang20

Latest awards to Dylan Wang

Popular Question 4 weeks ago, created a question with more than 1,000 views. For About TCGA CNV data preprocessing
Popular Question 11 months ago, created a question with more than 1,000 views. For About TCGA CNV data preprocessing

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