User: basch

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basch0
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Posts by basch

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Comment: C: How can multiarray results have more than 1 gene name for each row?
... But how should I input this list into Ensembl Biomart? The rows with more than one gene will be invalid. Also, the number of genes is then more than what they state in the paper. Is this a microarray thing that I don't understand? ...
written 3 months ago by basch0
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How can multiarray results have more than 1 gene name for each row?
... I am currently looking at a paper that are using a panel of 357 genes to test some illness. I want to retrieve the list of these 357 genes to make some own analyses in my own data-set (RNA-seq experiment) However, when I look at the list of genes that they provided, the list has 357 rows, which see ...
microarray rna-seq written 3 months ago by basch0 • updated 12 weeks ago by Ahill1.5k
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DE Analysis starting from TPM matrix? Also, no replicates.
... I have a matrix of TPM values from 27 different tissue types that I obtained from a database (thus, I don't have the read counts). The data comes from an RNA-seq experiment. I want to make differential expression analysis, where the purpose is to find a set of genes that is specific for one of tho ...
tpm rna-seq written 5 months ago by basch0 • updated 5 months ago by Michael Dondrup46k
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Comment: C: Math Guide For Bioinformatics
... I can see this an old thread, but I find myself in a very similar position. What would be your conclusion by now? Any approach/source that helped more than others? ...
written 6 months ago by basch0

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