User: sara.zahran

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Posts by sara.zahran

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deconseq syntax error
... Hello, I am trying to removal human sequences from metagenome sequences using deconseq-standalone-0.4.3, first I downloaded hs_ref_GRCh37 conseq databases s1, s2 and s3 then I modified the deconseqconfig.pm as follows: use constant DBS => {hsref => {name => 'hs_ref_GRCh37_s1','hs_ref_ ...
software error written 7 weeks ago by sara.zahran0 • updated 7 weeks ago by WouterDeCoster35k
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only 5 files in deconseq database
... I am trying to create database using deconseq, only 5 files were created but the manual said they should be 8 files, so were i try to clean my sequences i got an error "database does not exist in config file" and i am sure it exists, thanks for help ...
sequence written 9 weeks ago by sara.zahran0
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Comment: A: Getting Started with Deconseq
... if you please i need to know how you solved this problem as i tried to generate my database but i got only 5 files instead of 8 ...
written 9 weeks ago by sara.zahran0
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Comment: A: Getting Started with Deconseq
... if you please i want to know how you solved this problem as this mentioned command bwa64 index -p viren -a bwtsw virus_ti.fa >out.txt 2>&1 & generated only 5 files instead of 8, can you help me solve the problem? ...
written 9 weeks ago by sara.zahran0

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