User: hila

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hila0
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Posts by hila

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Comment: C: Error using bedtools "intersect" command
... yes, does it matter? should I change it to chr1, chr2...? ...
written 8 weeks ago by hila0
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Comment: C: Error using bedtools "intersect" command
... I got the gz file from another source, I didn't make it myself. The thing is- this code already worked with the same gz file and another bed file, so I guess the problem is with the new bed file, I just can't find it :( ...
written 8 weeks ago by hila0
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Comment: C: Error using bedtools "intersect" command
... Hi, the sorting was done by > cat file_name|sort -k1,1n -k2,2n The line bedtools is complaining about is the first line in the bed file, the line after it is in order Thanks Hila ...
written 8 weeks ago by hila0
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Comment: C: Error using bedtools "intersect" command
... I've added it to the original post. Thanks! ...
written 8 weeks ago by hila0
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Error using bedtools "intersect" command
... Hi all, I'm trying to intersect a vcf file (as file -a) with a bed file (as file -b). I'm getting this error: ERROR: Received illegal bin number 4294967295 from getBin call. ERROR: Unable to add record to tree. After reading some previous similar questions, **I made sure that my bed file i ...
software error bedtools written 8 weeks ago by hila0 • updated 8 weeks ago by Pierre Lindenbaum115k

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