User: skevalkumar

gravatar for skevalkumar
Reputation:
0
Status:
New User
Last seen:
6 hours ago
Joined:
3 months ago
Email:
s**********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by skevalkumar

<prev • 9 results • page 1 of 1 • next >
0
votes
0
answers
110
views
0
answers
Comment: C: Alignment of Query-RNA Seq
... It is showing almost similar result (0.0008%). I have checked few reads in NCBI. It is matching with my plant species. ...
written 5 days ago by skevalkumar0
0
votes
0
answers
110
views
0
answers
Comment: C: Alignment of Query-RNA Seq
... Hi, I have tried bbmap.sh and it shows 0.0011% mapped reads. I am reading bbmap reference guide (it is new to me.) thank you for help. Please give me more suggestions. ...
written 6 days ago by skevalkumar0
0
votes
0
answers
110
views
0
answers
Comment: C: Alignment of Query-RNA Seq
... There was no alignment with bowtie2 (all default parameters with endtoend and local) and bwa mem. ...
written 7 days ago by skevalkumar0
0
votes
0
answers
110
views
0
answers
Comment: C: Alignment of Query-RNA Seq
... length of query sequence -2600bp ...
written 7 days ago by skevalkumar0
0
votes
0
answers
110
views
0
answers
Comment: C: Alignment of Query-RNA Seq
... I did indexing of my query sequence and tried (--end-to-end and --local parameters) to align with RNA-Seq data. However, overall alignment rate was 0.00%. ...
written 7 days ago by skevalkumar0
4
votes
0
answers
110
views
0
answers
Alignment of Query-RNA Seq
... I am trying to align query sequence with RNA-Seq data (100bp PE). I have tried Bowtie2 and BWA. However, it did not give me reads that are matching or mismatched with query sequence. (I am not interested in aligning RNA-Seq data with Reference genome). ...
alignment rna-seq written 7 days ago by skevalkumar0
0
votes
0
answers
178
views
0
answers
Comment: A: Mapping query sequence with RNA-Seq
... None of the reads aligned perfectly with query sequence ...
written 3 months ago by skevalkumar0
0
votes
0
answers
178
views
0
answers
Comment: C: Mapping query sequence with RNA-Seq
... No, I have my query sequence (around 4kb) and trying to align with one of my RNA-Seq data. When I am getting reads, there is not a 100% match of my read with my query sequence. ...
written 3 months ago by skevalkumar0
2
votes
0
answers
178
views
0
answers
Mapping query sequence with RNA-Seq
... I am trying to map query sequence with RNA-Seq data. I have tried with BWA-MEM and HISAT2 that gives many reads. However, it does not provide any read with 100% match with query read. I appreciate recommendations in terms of software and parameters. ...
alignment rna-seq written 3 months ago by skevalkumar0

Latest awards to skevalkumar

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1143 users visited in the last hour