User: mjdm

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mjdm0
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Posts by mjdm

<prev • 5 results • page 1 of 1 • next >
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Downloading miRNA data using TCGABiolinks
... Hi everybody, I would like to download the miRNA expression data from TCGA-PRAD, concerning normal samples. I tried with TCGABiolinks, but I'm stuck since there are some duplicate in the DB and I cannot go on. Does anyone could help me? ...
tcgabiolinks tcga mirna written 4 months ago by mjdm0
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Comment: C: Disease Free Survival_ TCGA
... Actually yes, my supervisor asked me. I have all the clinic data from TCGA (PRAD) for each sample, so: days to birth, days to death (if available) and their vital status (alive, dead). In theory, the disease-free survival is indicated as a percentage of survival/time. But I would like to know if the ...
written 5 months ago by mjdm0
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Disease Free Survival_ TCGA
... Hi everybody, I'm trying to study the disease-free survival of PRAD samples from TCGA. I obtained all clinic data but since almost all samples on the 500 available ones are "alive" I thought it was better to focus on disease-free survival more than on Overall Survival. Now I'm stuck since I cannot ...
tcga survival written 5 months ago by mjdm0
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ChIPSeq Analysis on GEO Fastq data on Galaxy
... Hello! I'm trying to analyse some ChIPSeq data from a GEO repository. These files are all in fastq and I easily found a way to download them directly into my Galaxy History. Since they are completely unprocessed data, I should start with mapping them and than convert them. I'm having a lot of probl ...
geo chip-seq written 5 months ago by mjdm0 • updated 5 months ago by genomax89k
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Differentially expressed genes interactome
... Hello everybody. Starting from RnaSeq data, my collegues were able to select all differentially expressed genes accordingly to the low/higher expression of our gene of interest in some tumour types. I would like to create such an interaction network, starting from these DE genes. Any suggestion? ...
rna-seq deg interactome written 20 months ago by mjdm0

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