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6
votes
1
reply
287
views
16S vs shotgun tools
metagenomics
9 weeks ago by anasjamshed ▴ 120
5
votes
5
replies
517
views
How to check the quality of fasta file
fastqc fasta
updated 9 weeks ago by 77k • written 9 weeks ago by ▴ 120
2
votes
5
replies
348
views
kraken in windows
kraken
updated 9 weeks ago by 40k • written 9 weeks ago by ▴ 120
3
votes
3
replies
358
views
scrna pipeline
scRNA-seq
updated 10 weeks ago by ▴ 60 • written 10 weeks ago by ▴ 120
4
votes
14
replies
1.4k
views
RSEM implementation
RSEM
updated 3 months ago by 40k • written 3 months ago by ▴ 120
0
votes
0
replies
180
views
Identify SNPs with Fst estimates > 0.9 and annotate them
snpeff fst SNP
4 months ago by anasjamshed ▴ 120
2
votes
5
replies
582
views
vcftools on 2 snpeff vcf files
snpeff vcftools
updated 3 months ago by 40k • written 5 months ago by ▴ 120
1
vote
3
replies
461
views
SnpEff eff Error
SnpEff Galaxy
updated 5 months ago by ★ 2.3k • written 5 months ago by ▴ 120
2
votes
3
replies
354
views
Variants that are different between the clown and control
Difference VCF
updated 5 months ago by 134k • written 5 months ago by ▴ 120
1
vote
3
replies
275
views
Error while running GATK4 Mutect2 in Galaxy
Mutect2 GATK4
updated 5 months ago by 157k • written 5 months ago by ▴ 120
3
votes
5
replies
614
views
Reference genome of python molurus bivittatus
bivittatus python molurus
updated 5 months ago by 134k • written 5 months ago by ▴ 120
1
vote
1
reply
668
views
Installing pybedtools in Windows 10
pybedtools
updated 5 months ago by 17k • written 5 months ago by ▴ 120
2
votes
6
replies
586
views
problem with bedtools getfasta
getfasta bedtools
5 months ago by anasjamshed ▴ 120
2
votes
3
replies
382
views
Problem while executing bedtools sort
genome bedtools
updated 5 months ago by 40k • written 5 months ago by ▴ 120
1
vote
3
replies
617
views
Is it possible to draw volcano plot without p values
p-value log2fold plot
updated 5 months ago by 40k • written 5 months ago by ▴ 120
0
votes
4
replies
430
views
Problem in retrieving geo data sets
geo
6 months ago by anasjamshed ▴ 120
3
votes
6
replies
724
views
Pig Reference Genome
Genome
updated 6 months ago by 21k • written 6 months ago by ▴ 120
0
votes
0
replies
269
views
MethylR on bam files Gives Error
MethylR bismark
6 months ago by anasjamshed ▴ 120
2
votes
8
replies
855
views
Use bismark files to run methylKit
bismark R
6 months ago by anasjamshed ▴ 120
2
votes
2
replies
1.5k
views
bcftools annotate -a
bcftools VCF
updated 3 months ago by 40k • written 7 months ago by ▴ 120
0
votes
2
replies
377
views
Analyze 2 or 3 different datasets from GEO2R
Microarray GEO
7 months ago by anasjamshed ▴ 120
1
vote
9
replies
940
views
Split trio vcf file
bcftools VCF
updated 7 months ago by 40k • written 7 months ago by ▴ 120
0
votes
13
replies
1.1k
views
Use bcftools isec to find denovo mutations
mutations denovo
updated 7 months ago by 40k • written 7 months ago by ▴ 120
0
votes
0
replies
356
views
Seperate males and females samples from trio.vcf
vcf shell
7 months ago by anasjamshed ▴ 120
16
votes
10
replies
1.5k
views
Unable to Create Index file of VCF
VCF
updated 7 months ago by 40k • written 7 months ago by ▴ 120
1
vote
9
replies
1.0k
views
Obtaining bcf and vcf files and use bcf tool annotate
bcftools
updated 7 months ago by 40k • written 7 months ago by ▴ 120
2
votes
6
replies
738
views
Design and Contrast Matrix in Limma Analysis
R
updated 7 months ago by 4.1k • written 7 months ago by ▴ 120
0
votes
6
replies
652
views
expression of the GAT1 transport protein
protein GEO gene
updated 7 months ago by 40k • written 7 months ago by ▴ 120
10
votes
7
replies
1.1k
views
Use tximport to merge and transform the transcript counts to gene counts
RNAseq gene
updated 8 months ago by 40k • written 9 months ago by ▴ 120
1
vote
12
replies
1.2k
views
Disease information from gene names
Genes Disease
9 months ago by anasjamshed ▴ 120
0
votes
5
replies
777
views
Create phylogenetic tree of 144 species
phylogenetic-tree
updated 8 months ago by 40k • written 9 months ago by ▴ 120
0
votes
5
replies
744
views
How to create bigwig file in galaxy after MACS procedure(Chip Seq)
ChIP-Seq Galaxy
updated 9 months ago by 40k • written 9 months ago by ▴ 120
0
votes
0
replies
226
views
Problem in visulaizing peak files in IGB(Windows)
IGB Galaxy
9 months ago by anasjamshed ▴ 120
12
votes
25
replies
1.9k
views
Transform Data into DNA picture
DNA
updated 9 months ago by 47k • written 9 months ago by ▴ 120
0
votes
3
replies
406
views
Difference between RNA Seq and Microarray
microarray RNA-seq
updated 10 months ago by 40k • written 10 months ago by ▴ 120
1
vote
3
replies
498
views
Blast Variations
blast
updated 9 months ago by 40k • written 10 months ago by ▴ 120
2
votes
2
replies
508
views
How to generate pathway analysis report for a list of proteins
python R
updated 9 months ago by 40k • written 11 months ago by ▴ 120
0
votes
0
replies
244
views
Problem in Python script of NJ
python
updated 11 months ago by 40k • written 11 months ago by ▴ 120
0
votes
2
replies
533
views
String is not accepting more than 2000 genes
python API
updated 11 months ago by 40k • written 12 months ago by ▴ 120
0
votes
0
replies
348
views
Problem in generating interactions graphs through python script
String Python
updated 11 months ago by 40k • written 12 months ago by ▴ 120
1
vote
2
replies
804
views
How to use seqkit in ubuntu wsl
Linux
updated 11 months ago by 40k • written 13 months ago by ▴ 120
0
votes
6
replies
813
views
Merging different fastq files into one folder
R
updated 11 months ago by 40k • written 13 months ago by ▴ 120
0
votes
0
replies
235
views
How to find planaria genes and make their network
Genes planaria
updated 9 months ago by 40k • written 14 months ago by ▴ 120
0
votes
5
replies
678
views
NGS reads calculation
Galaxy
updated 9 months ago by 40k • written 14 months ago by ▴ 120
8
votes
2
replies
590
views
Python script to process NGS data
python
updated 9 months ago by 40k • written 16 months ago by ▴ 120
0
votes
0
replies
322
views
Bar and line graphs using Bokeh Module in python
Plots Biopython
updated 16 months ago by 40k • written 17 months ago by ▴ 120
0
votes
9
replies
957
views
BlastX through Biopython
Biopython
updated 16 months ago by 40k • written 17 months ago by ▴ 120
0
votes
3
replies
594
views
Error in running Prokka through Galaxy
Prokka
updated 9 months ago by 40k • written 17 months ago by ▴ 120
0
votes
0
replies
314
views
Problem in Docking with HADDOCK
Docking Chimera
updated 9 months ago by 40k • written 19 months ago by ▴ 120
3
votes
4
replies
1.1k
views
How can we classify our protein as an α, a β, an α/ β or an α + β protein?
PDB
updated 9 months ago by 40k • written 19 months ago by ▴ 120
115 results • Page 1 of 3
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