User: LindoNkambule

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Posts by LindoNkambule

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Comment: C: Extracting Flanking Regions using Biopython
... I want every single flank as a separate fasta file. For every target region on my BED, I want to extract flanking regions both upstream and downstream and the first two lines of the script do this very well. The problem arises when I want to write these flanking regions into separate files, and this ...
written 8 weeks ago by LindoNkambule0
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Extracting Flanking Regions using Biopython
... Hi everyone, I have written a bash script, with a python script embedded in it, to extract flanking regions from a BED using hg19 as the reference and save these flanking regions into separate FASTA files using their record IDs. I have a FASTA file with all the flanking regions sequences upstream a ...
bedtools biopython written 8 weeks ago by LindoNkambule0 • updated 8 weeks ago by jrj.healey9.2k

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