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Posts by jiaqiwu
... Hi all, TCGA documentation for the MAFs (mutation annotation files) have `Allele1` and `Allele2` versions of similar values; what is the difference between these alleles? For instance, I am interested in `Tumor_Seq_Allele` but not sure whether to use `Tumor_Seq_Allele1` or `Tumor_Seq_Allele2`. I ...
... I've downloaded some miRNA expression data from TCGA (for CHOL) and the isoform quantification files look like this: miRNA_ID isoform_coords read_count reads_per_million_miRNA_mapped cross-mapped miRNA_region hsa-let-7a-1 hg38:chr9:94175939-94175962:+ 1 0.706072 N precursor hsa-let-7a ...
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